Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC14.56□□□□□ -0.08
BDNFP23560 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC14.56□□□□□ -0.08
BDNFP23560 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC14.56□□□□□ -0.08
BDNFP23560 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
BDNFP23560 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
BDNFP23560 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC14.56□□□□□ -0.08
BDNFP23560 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 CETP-203ENST00000566128 1733 ntTSL 5 BASIC14.56□□□□□ -0.08
BDNFP23560 AL359881.3-201ENST00000602640 1721 ntBASIC14.56□□□□□ -0.08
BDNFP23560 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
BDNFP23560 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC14.56□□□□□ -0.08
BDNFP23560 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
BDNFP23560 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 ABCD1P4-201ENST00000399687 604 ntBASIC14.56□□□□□ -0.08
BDNFP23560 SNORA50C-201ENST00000408535 133 ntBASIC14.56□□□□□ -0.08
BDNFP23560 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC14.56□□□□□ -0.08
BDNFP23560 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
BDNFP23560 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC14.56□□□□□ -0.08
BDNFP23560 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
BDNFP23560 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC14.56□□□□□ -0.08
BDNFP23560 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC14.56□□□□□ -0.08
BDNFP23560 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC14.56□□□□□ -0.08
BDNFP23560 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC14.56□□□□□ -0.08
BDNFP23560 TRMT112P3-201ENST00000580149 358 ntBASIC14.56□□□□□ -0.08
BDNFP23560 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC14.56□□□□□ -0.08
BDNFP23560 SEPT14P19-201ENST00000587432 336 ntTSL 2 BASIC14.56□□□□□ -0.08
BDNFP23560 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC14.56□□□□□ -0.08
BDNFP23560 MIR8071-1-201ENST00000616769 65 ntBASIC14.56□□□□□ -0.08
BDNFP23560 MIR8071-2-201ENST00000616772 65 ntBASIC14.56□□□□□ -0.08
BDNFP23560 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 SNORA50.1-201ENST00000628590 135 ntBASIC14.56□□□□□ -0.08
BDNFP23560 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC14.56□□□□□ -0.08
BDNFP23560 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC14.56□□□□□ -0.08
BDNFP23560 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
BDNFP23560 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC14.56□□□□□ -0.08
BDNFP23560 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 LINC00638-201ENST00000555578 2518 ntBASIC14.56□□□□□ -0.08
BDNFP23560 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
BDNFP23560 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 ERCC4-207ENST00000575156 2073 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
BDNFP23560 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 TLN2-202ENST00000472902 2116 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 SELENBP1-208ENST00000447402 1530 ntTSL 2 BASIC14.56□□□□□ -0.08
BDNFP23560 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC14.56□□□□□ -0.08
BDNFP23560 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
BDNFP23560 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
BDNFP23560 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
BDNFP23560 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
BDNFP23560 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
BDNFP23560 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
BDNFP23560 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.08
BDNFP23560 MEFV-203ENST00000536379 1713 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
BDNFP23560 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
BDNFP23560 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
BDNFP23560 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
BDNFP23560 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
BDNFP23560 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.08
BDNFP23560 ROPN1B-202ENST00000504401 2050 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
BDNFP23560 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
BDNFP23560 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
BDNFP23560 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
BDNFP23560 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC14.55□□□□□ -0.08
BDNFP23560 AC147651.3-201ENST00000429872 731 ntTSL 2 BASIC14.55□□□□□ -0.08
BDNFP23560 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC14.55□□□□□ -0.08
BDNFP23560 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC14.55□□□□□ -0.08
BDNFP23560 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC14.55□□□□□ -0.08
BDNFP23560 AC013553.1-201ENST00000560906 267 ntBASIC14.55□□□□□ -0.08
BDNFP23560 MT3-202ENST00000561640 514 ntTSL 3 BASIC14.55□□□□□ -0.08
BDNFP23560 AC068152.1-205ENST00000575173 1081 ntTSL 3 BASIC14.55□□□□□ -0.08
BDNFP23560 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC14.55□□□□□ -0.08
BDNFP23560 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
BDNFP23560 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
BDNFP23560 TNFSF13-203ENST00000380535 2195 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
BDNFP23560 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC14.55□□□□□ -0.08
BDNFP23560 AL031056.1-202ENST00000635954 2193 ntTSL 5 BASIC14.55□□□□□ -0.08
BDNFP23560 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
BDNFP23560 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC14.55□□□□□ -0.08
BDNFP23560 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
BDNFP23560 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms