Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL9A1P20849 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
COL9A1P20849 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL9A1P20849 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC14.16□□□□□ -0.14
COL9A1P20849 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL9A1P20849 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.16□□□□□ -0.14
COL9A1P20849 MYB-201ENST00000316528 3571 ntTSL 5 BASIC14.16□□□□□ -0.14
COL9A1P20849 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL9A1P20849 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
COL9A1P20849 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL9A1P20849 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL9A1P20849 CLEC10A-206ENST00000576617 1800 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL9A1P20849 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL9A1P20849 CKS2-201ENST00000314355 613 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL9A1P20849 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL9A1P20849 IGHV1OR15-9-201ENST00000338912 353 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
COL9A1P20849 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL9A1P20849 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC14.16□□□□□ -0.14
COL9A1P20849 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC14.16□□□□□ -0.14
COL9A1P20849 AC005324.2-201ENST00000433051 415 ntTSL 5 BASIC14.16□□□□□ -0.14
COL9A1P20849 HACL1-206ENST00000435217 1269 ntTSL 2 BASIC14.16□□□□□ -0.14
COL9A1P20849 DHRSX-IT1-201ENST00000437244 651 ntTSL 5 BASIC14.16□□□□□ -0.14
COL9A1P20849 SOX2-OT-203ENST00000466034 926 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL9A1P20849 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC14.16□□□□□ -0.14
COL9A1P20849 TBC1D3P6-201ENST00000505954 962 ntBASIC14.16□□□□□ -0.14
COL9A1P20849 AC098591.1-202ENST00000507914 937 ntBASIC14.16□□□□□ -0.14
COL9A1P20849 AC026407.1-201ENST00000518369 204 ntBASIC14.16□□□□□ -0.14
COL9A1P20849 BATF-202ENST00000555504 361 ntTSL 2 BASIC14.16□□□□□ -0.14
COL9A1P20849 CD276-217ENST00000564751 951 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL9A1P20849 MSRB1-205ENST00000564908 550 ntTSL 3 BASIC14.16□□□□□ -0.14
COL9A1P20849 GABARAPL2-203ENST00000565057 571 ntTSL 2 BASIC14.16□□□□□ -0.14
COL9A1P20849 DNM1P50-201ENST00000565767 508 ntBASIC14.16□□□□□ -0.14
COL9A1P20849 MT1L-201ENST00000565768 411 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL9A1P20849 RN7SL322P-201ENST00000583519 299 ntBASIC14.16□□□□□ -0.14
COL9A1P20849 SOX2-OT-221ENST00000594942 675 ntTSL 5 BASIC14.16□□□□□ -0.14
COL9A1P20849 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC14.16□□□□□ -0.14
COL9A1P20849 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC14.16□□□□□ -0.14
COL9A1P20849 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
COL9A1P20849 AL359742.1-201ENST00000622497 540 ntBASIC14.16□□□□□ -0.14
COL9A1P20849 IL4R-219ENST00000628578 201 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL9A1P20849 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC14.16□□□□□ -0.14
COL9A1P20849 GSTT2-203ENST00000634759 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL9A1P20849 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
COL9A1P20849 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL9A1P20849 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL9A1P20849 INCA1-201ENST00000355025 1383 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL9A1P20849 RNF141-202ENST00000528665 1374 ntTSL 2 BASIC14.16□□□□□ -0.14
COL9A1P20849 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC14.16□□□□□ -0.14
COL9A1P20849 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC14.16□□□□□ -0.14
COL9A1P20849 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL9A1P20849 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
COL9A1P20849 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL9A1P20849 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC14.16□□□□□ -0.14
COL9A1P20849 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL9A1P20849 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
COL9A1P20849 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC14.16□□□□□ -0.14
COL9A1P20849 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
COL9A1P20849 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC14.16□□□□□ -0.14
COL9A1P20849 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL9A1P20849 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL9A1P20849 NID2-208ENST00000617139 3827 ntTSL 5 BASIC14.16□□□□□ -0.14
COL9A1P20849 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL9A1P20849 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL9A1P20849 LYPLA1-202ENST00000343231 1308 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
COL9A1P20849 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
COL9A1P20849 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC14.15□□□□□ -0.14
COL9A1P20849 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.15□□□□□ -0.14
COL9A1P20849 CICP24-201ENST00000605464 2705 ntBASIC14.15□□□□□ -0.14
COL9A1P20849 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC14.15□□□□□ -0.14
COL9A1P20849 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC14.15□□□□□ -0.14
COL9A1P20849 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
COL9A1P20849 AC090774.4-201ENST00000578888 1372 ntBASIC14.15□□□□□ -0.14
COL9A1P20849 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 RNF181-201ENST00000306368 569 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 NR2C2AP-201ENST00000331552 1293 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 PSMA7-202ENST00000370861 773 ntTSL 5 BASIC14.15□□□□□ -0.14
COL9A1P20849 PBDC1-202ENST00000373358 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 NR2C2AP-202ENST00000420605 859 ntTSL 2 BASIC14.15□□□□□ -0.14
COL9A1P20849 LINC00618-201ENST00000435624 700 ntTSL 5 BASIC14.15□□□□□ -0.14
COL9A1P20849 AL445471.1-201ENST00000456316 820 ntTSL 5 BASIC14.15□□□□□ -0.14
COL9A1P20849 KRT18P15-201ENST00000458108 1291 ntBASIC14.15□□□□□ -0.14
COL9A1P20849 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC14.15□□□□□ -0.14
COL9A1P20849 OARD1-214ENST00000486443 764 ntTSL 3 BASIC14.15□□□□□ -0.14
COL9A1P20849 RN7SL477P-201ENST00000488440 286 ntBASIC14.15□□□□□ -0.14
COL9A1P20849 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC14.15□□□□□ -0.14
COL9A1P20849 AC090568.1-201ENST00000509499 856 ntBASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms