Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 MESTP3-201ENST00000503460 968 ntBASIC10.75□□□□□ -0.69
CXCL1P09341 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC10.75□□□□□ -0.69
CXCL1P09341 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC10.75□□□□□ -0.69
CXCL1P09341 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC10.75□□□□□ -0.69
CXCL1P09341 TPRX2P-201ENST00000535362 881 ntBASIC10.75□□□□□ -0.69
CXCL1P09341 SNHG9-202ENST00000564014 471 ntBASIC10.75□□□□□ -0.69
CXCL1P09341 AC009407.1-201ENST00000568958 598 ntBASIC10.75□□□□□ -0.69
CXCL1P09341 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC10.75□□□□□ -0.69
CXCL1P09341 MVK-217ENST00000639206 367 ntTSL 5 BASIC10.75□□□□□ -0.69
CXCL1P09341 POC1B-GALNT4-202ENST00000548729 5436 ntAPPRIS P1 TSL 2 BASIC10.75□□□□□ -0.69
CXCL1P09341 SEMA3F-206ENST00000434342 3541 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
CXCL1P09341 FRMD6-203ENST00000395718 4828 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CXCL1P09341 IKBKE-203ENST00000581977 3221 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
CXCL1P09341 LDLR-205ENST00000557933 2941 ntAPPRIS ALT2 TSL 5 BASIC10.75□□□□□ -0.69
CXCL1P09341 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
CXCL1P09341 TGM3-201ENST00000381458 2642 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CXCL1P09341 C1QTNF3-201ENST00000231338 1959 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
CXCL1P09341 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CXCL1P09341 SLC2A1-203ENST00000426263 3667 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CXCL1P09341 ABR-201ENST00000291107 2673 ntTSL 2 BASIC10.75□□□□□ -0.69
CXCL1P09341 HLCS-201ENST00000336648 6010 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CXCL1P09341 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
CXCL1P09341 CYTH1-210ENST00000589297 3756 ntTSL 5 BASIC10.75□□□□□ -0.69
CXCL1P09341 ARHGEF10L-202ENST00000361221 4488 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
CXCL1P09341 TADA2B-205ENST00000515646 3818 ntBASIC10.75□□□□□ -0.69
CXCL1P09341 TRAK1-201ENST00000327628 5293 ntAPPRIS P2 TSL 1 (best) BASIC10.75□□□□□ -0.69
CXCL1P09341 DIP2C-205ENST00000634311 4961 ntTSL 5 BASIC10.75□□□□□ -0.69
CXCL1P09341 ACOX3-201ENST00000356406 2860 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CXCL1P09341 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CXCL1P09341 RUBCN-202ENST00000296343 2919 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
CXCL1P09341 CACNA1G-218ENST00000507510 7014 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
CXCL1P09341 HCN3-201ENST00000368358 3718 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CXCL1P09341 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
CXCL1P09341 LDB3-202ENST00000361373 5297 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
CXCL1P09341 MSH6-213ENST00000614496 4150 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
CXCL1P09341 PSMD5-201ENST00000210313 3443 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CXCL1P09341 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC10.74□□□□□ -0.69
CXCL1P09341 DPP3-215ENST00000541961 2676 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
CXCL1P09341 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC10.74□□□□□ -0.69
CXCL1P09341 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC10.74□□□□□ -0.69
CXCL1P09341 PHLDB1-201ENST00000356063 5240 ntAPPRIS ALT2 TSL 2 BASIC10.74□□□□□ -0.69
CXCL1P09341 RAB11FIP3-205ENST00000450428 3203 ntTSL 2 BASIC10.74□□□□□ -0.69
CXCL1P09341 HDAC7-230ENST00000552960 3216 ntAPPRIS ALT2 TSL 2 BASIC10.74□□□□□ -0.69
CXCL1P09341 TRPC7-203ENST00000502753 2424 ntTSL 5 BASIC10.74□□□□□ -0.69
CXCL1P09341 LINC00540-203ENST00000631321 2412 ntTSL 2 BASIC10.74□□□□□ -0.69
CXCL1P09341 ZKSCAN1-202ENST00000426572 2011 ntTSL 2 BASIC10.74□□□□□ -0.69
CXCL1P09341 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
CXCL1P09341 ANKRD36-204ENST00000461153 6102 ntAPPRIS P2 TSL 5 BASIC10.74□□□□□ -0.69
CXCL1P09341 JUP-202ENST00000393930 3298 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
CXCL1P09341 CFAP43-204ENST00000369720 2876 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
CXCL1P09341 NFATC2-202ENST00000396009 7437 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
CXCL1P09341 GDPD2-205ENST00000538649 2067 ntTSL 2 BASIC10.74□□□□□ -0.69
CXCL1P09341 EHD1-201ENST00000320631 4551 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CXCL1P09341 CAMTA2-204ENST00000414043 4589 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
CXCL1P09341 DYNC1I1-205ENST00000447467 2947 ntAPPRIS ALT1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CXCL1P09341 SHOX-203ENST00000381578 3757 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
CXCL1P09341 KCNAB2-206ENST00000378097 4201 ntAPPRIS P4 TSL 1 (best) BASIC10.74□□□□□ -0.69
CXCL1P09341 ACKR1-201ENST00000368121 1240 ntBASIC10.74□□□□□ -0.69
CXCL1P09341 PJA1-204ENST00000374584 2115 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
CXCL1P09341 LINC01114-202ENST00000424321 2112 ntTSL 2 BASIC10.74□□□□□ -0.69
CXCL1P09341 PUDPP3-201ENST00000445368 636 ntBASIC10.74□□□□□ -0.69
CXCL1P09341 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC10.74□□□□□ -0.69
CXCL1P09341 KRT18P25-201ENST00000508931 1278 ntBASIC10.74□□□□□ -0.69
CXCL1P09341 SPDYE18-201ENST00000510091 1050 ntBASIC10.74□□□□□ -0.69
CXCL1P09341 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC10.74□□□□□ -0.69
CXCL1P09341 AC104596.2-201ENST00000512793 793 ntBASIC10.74□□□□□ -0.69
CXCL1P09341 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC10.74□□□□□ -0.69
CXCL1P09341 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC10.74□□□□□ -0.69
CXCL1P09341 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC10.74□□□□□ -0.69
CXCL1P09341 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC10.74□□□□□ -0.69
CXCL1P09341 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC10.74□□□□□ -0.69
CXCL1P09341 AC124283.3-201ENST00000570869 594 ntBASIC10.74□□□□□ -0.69
CXCL1P09341 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC10.74□□□□□ -0.69
CXCL1P09341 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC10.74□□□□□ -0.69
CXCL1P09341 AP001462.1-201ENST00000594089 452 ntBASIC10.74□□□□□ -0.69
CXCL1P09341 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC10.74□□□□□ -0.69
CXCL1P09341 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CXCL1P09341 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
CXCL1P09341 SF1-204ENST00000377390 3470 ntAPPRIS ALT1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CXCL1P09341 RIMS1-201ENST00000264839 7055 ntTSL 5 BASIC10.74□□□□□ -0.69
CXCL1P09341 DPAGT1-201ENST00000354202 2205 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CXCL1P09341 AC090136.3-201ENST00000520834 2704 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
CXCL1P09341 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CXCL1P09341 ENDOU-201ENST00000229003 2332 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
CXCL1P09341 CRHR1-206ENST00000398285 2399 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
CXCL1P09341 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC10.74□□□□□ -0.69
CXCL1P09341 AC009093.10-201ENST00000641956 1442 ntBASIC10.74□□□□□ -0.69
CXCL1P09341 SYS1-201ENST00000243918 2862 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CXCL1P09341 LINC01134-202ENST00000439488 1940 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
CXCL1P09341 IST1-203ENST00000378799 4843 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CXCL1P09341 CTAGE7P-201ENST00000435712 2436 ntBASIC10.74□□□□□ -0.69
CXCL1P09341 FCHO1-208ENST00000595033 2907 ntTSL 2 BASIC10.74□□□□□ -0.69
CXCL1P09341 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
CXCL1P09341 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC10.74□□□□□ -0.69
CXCL1P09341 FAM120C-202ENST00000375180 8057 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
CXCL1P09341 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC10.74□□□□□ -0.69
CXCL1P09341 MED29-207ENST00000615911 3565 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
CXCL1P09341 WNT5A-201ENST00000264634 6176 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CXCL1P09341 NIT1-202ENST00000368008 2081 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
CXCL1P09341 LSINCT5-201ENST00000626215 2647 ntBASIC10.73□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms