Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 ANO6-203ENST00000425752 3558 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
MRE11P49959 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC16.28■□□□□ 0.2
MRE11P49959 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
MRE11P49959 SRP72-205ENST00000510663 2473 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MRE11P49959 GRM2-202ENST00000395052 3151 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
MRE11P49959 GDAP2-201ENST00000369442 2436 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MRE11P49959 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
MRE11P49959 KCNK10-202ENST00000319231 2725 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
MRE11P49959 DFFB-205ENST00000378209 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MRE11P49959 ZNF180-201ENST00000221327 4335 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
MRE11P49959 GRN-222ENST00000639447 1314 ntTSL 2 BASIC16.28■□□□□ 0.2
MRE11P49959 KCNT1-213ENST00000630792 3606 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
MRE11P49959 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
MRE11P49959 PLOD3-201ENST00000223127 2920 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
MRE11P49959 TNFRSF8-203ENST00000417814 3593 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MRE11P49959 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MRE11P49959 MZF1-AS1-202ENST00000600534 2567 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MRE11P49959 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC16.28■□□□□ 0.2
MRE11P49959 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
MRE11P49959 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MRE11P49959 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MRE11P49959 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MRE11P49959 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MRE11P49959 HLA-DQB2-229ENST00000411527 1059 ntBASIC16.28■□□□□ 0.2
MRE11P49959 ACTG1P3-201ENST00000431775 1114 ntBASIC16.28■□□□□ 0.2
MRE11P49959 ATP6V0CP2-201ENST00000469409 207 ntBASIC16.28■□□□□ 0.2
MRE11P49959 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC16.28■□□□□ 0.2
MRE11P49959 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC16.28■□□□□ 0.2
MRE11P49959 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC16.28■□□□□ 0.2
MRE11P49959 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC16.28■□□□□ 0.2
MRE11P49959 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MRE11P49959 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC16.28■□□□□ 0.2
MRE11P49959 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC16.28■□□□□ 0.2
MRE11P49959 DUX4L45-201ENST00000566406 1057 ntBASIC16.28■□□□□ 0.2
MRE11P49959 MIR3619-201ENST00000579667 83 ntBASIC16.28■□□□□ 0.2
MRE11P49959 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MRE11P49959 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
MRE11P49959 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC16.28■□□□□ 0.2
MRE11P49959 AL603764.1-201ENST00000636452 321 ntBASIC16.28■□□□□ 0.2
MRE11P49959 MEGF11-201ENST00000288745 5707 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MRE11P49959 NRF1-202ENST00000311967 2481 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MRE11P49959 SH2D7-201ENST00000328828 2750 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
MRE11P49959 ELN-204ENST00000357036 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
MRE11P49959 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.28■□□□□ 0.2
MRE11P49959 SH3KBP1-202ENST00000379698 2678 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MRE11P49959 F10-203ENST00000409306 1450 ntTSL 3 BASIC16.28■□□□□ 0.2
MRE11P49959 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MRE11P49959 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC16.28■□□□□ 0.2
MRE11P49959 FRMD1-205ENST00000440994 2857 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
MRE11P49959 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MRE11P49959 DRD5P1-201ENST00000456605 1438 ntBASIC16.28■□□□□ 0.2
MRE11P49959 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
MRE11P49959 FAM156B-201ENST00000416841 2537 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
MRE11P49959 DLGAP3-202ENST00000373347 3856 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
MRE11P49959 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MRE11P49959 MISP-201ENST00000215582 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MRE11P49959 AL590644.1-201ENST00000412427 4676 ntTSL 4 BASIC16.27■□□□□ 0.2
MRE11P49959 ARAP3-203ENST00000508305 4927 ntTSL 2 BASIC16.27■□□□□ 0.2
MRE11P49959 HK3-201ENST00000292432 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MRE11P49959 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MRE11P49959 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
MRE11P49959 MPV17-206ENST00000402722 827 ntTSL 3 BASIC16.27■□□□□ 0.2
MRE11P49959 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC16.27■□□□□ 0.2
MRE11P49959 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC16.27■□□□□ 0.2
MRE11P49959 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC16.27■□□□□ 0.2
MRE11P49959 KRT18P66-201ENST00000452970 1269 ntBASIC16.27■□□□□ 0.2
MRE11P49959 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
MRE11P49959 AC027237.1-201ENST00000560942 655 ntBASIC16.27■□□□□ 0.2
MRE11P49959 AC020914.3-201ENST00000594712 304 ntBASIC16.27■□□□□ 0.2
MRE11P49959 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC16.27■□□□□ 0.2
MRE11P49959 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC16.27■□□□□ 0.2
MRE11P49959 PRKN-211ENST00000615065 261 ntTSL 5 BASIC16.27■□□□□ 0.2
MRE11P49959 AL008638.5-201ENST00000623814 1298 ntBASIC16.27■□□□□ 0.2
MRE11P49959 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
MRE11P49959 USB1-207ENST00000563149 1751 ntTSL 2 BASIC16.27■□□□□ 0.2
MRE11P49959 FBLN1-208ENST00000442170 2531 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
MRE11P49959 TJAP1-202ENST00000372444 2778 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
MRE11P49959 TJAP1-203ENST00000372445 2751 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
MRE11P49959 COL8A1-202ENST00000273342 3029 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
MRE11P49959 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
MRE11P49959 AC092902.2-210ENST00000468859 1996 ntTSL 2 BASIC16.27■□□□□ 0.19
MRE11P49959 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
MRE11P49959 AOC3-201ENST00000308423 4026 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
MRE11P49959 A1CF-204ENST00000373997 2116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
MRE11P49959 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC16.27■□□□□ 0.19
MRE11P49959 XRCC3-202ENST00000553264 3018 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
MRE11P49959 CHRNA7-223ENST00000637033 3204 ntTSL 5 BASIC16.26■□□□□ 0.19
MRE11P49959 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MRE11P49959 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
MRE11P49959 CEACAM20-203ENST00000614924 1809 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
MRE11P49959 VPS54-203ENST00000409558 4337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MRE11P49959 ATG16L1-201ENST00000347464 2915 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
MRE11P49959 PPP1R12B-214ENST00000491336 2046 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
MRE11P49959 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
MRE11P49959 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
MRE11P49959 FOXN3-219ENST00000615335 2421 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
MRE11P49959 MCM7-213ENST00000621318 3084 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
MRE11P49959 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MRE11P49959 AL132642.2-201ENST00000623423 1998 ntBASIC16.26■□□□□ 0.19
MRE11P49959 SLC26A6-207ENST00000420764 2630 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms