Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC14.12□□□□□ -0.15
USP39Q53GS9 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
USP39Q53GS9 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC14.12□□□□□ -0.15
USP39Q53GS9 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
USP39Q53GS9 HSPA8P5-201ENST00000456928 2069 ntBASIC14.12□□□□□ -0.15
USP39Q53GS9 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC14.12□□□□□ -0.15
USP39Q53GS9 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
USP39Q53GS9 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
USP39Q53GS9 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
USP39Q53GS9 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
USP39Q53GS9 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
USP39Q53GS9 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
USP39Q53GS9 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC14.12□□□□□ -0.15
USP39Q53GS9 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC14.12□□□□□ -0.15
USP39Q53GS9 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC14.12□□□□□ -0.15
USP39Q53GS9 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC14.12□□□□□ -0.15
USP39Q53GS9 AC092573.1-201ENST00000433054 884 ntBASIC14.12□□□□□ -0.15
USP39Q53GS9 KRT18P62-201ENST00000446618 1287 ntBASIC14.12□□□□□ -0.15
USP39Q53GS9 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC14.12□□□□□ -0.15
USP39Q53GS9 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC14.12□□□□□ -0.15
USP39Q53GS9 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
USP39Q53GS9 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC14.12□□□□□ -0.15
USP39Q53GS9 CISD2-202ENST00000503643 808 ntTSL 2 BASIC14.12□□□□□ -0.15
USP39Q53GS9 AC100858.1-201ENST00000514059 1228 ntBASIC14.12□□□□□ -0.15
USP39Q53GS9 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
USP39Q53GS9 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
USP39Q53GS9 AL160191.2-201ENST00000603975 601 ntBASIC14.12□□□□□ -0.15
USP39Q53GS9 AC104506.1-201ENST00000609247 429 ntBASIC14.12□□□□□ -0.15
USP39Q53GS9 HPX-213ENST00000615166 826 ntTSL 5 BASIC14.12□□□□□ -0.15
USP39Q53GS9 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC14.12□□□□□ -0.15
USP39Q53GS9 AC091769.1-201ENST00000619576 568 ntBASIC14.12□□□□□ -0.15
USP39Q53GS9 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC14.12□□□□□ -0.15
USP39Q53GS9 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
USP39Q53GS9 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
USP39Q53GS9 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
USP39Q53GS9 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
USP39Q53GS9 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC14.12□□□□□ -0.15
USP39Q53GS9 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
USP39Q53GS9 FUK-202ENST00000378912 3925 ntTSL 2 BASIC14.12□□□□□ -0.15
USP39Q53GS9 HPD-204ENST00000543163 1709 ntTSL 5 BASIC14.12□□□□□ -0.15
USP39Q53GS9 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
USP39Q53GS9 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
USP39Q53GS9 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
USP39Q53GS9 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
USP39Q53GS9 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
USP39Q53GS9 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC14.12□□□□□ -0.15
USP39Q53GS9 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
USP39Q53GS9 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC14.12□□□□□ -0.15
USP39Q53GS9 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
USP39Q53GS9 RPL13AP3-202ENST00000494676 1473 ntBASIC14.12□□□□□ -0.15
USP39Q53GS9 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14.12□□□□□ -0.15
USP39Q53GS9 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
USP39Q53GS9 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
USP39Q53GS9 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
USP39Q53GS9 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC14.12□□□□□ -0.15
USP39Q53GS9 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
USP39Q53GS9 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
USP39Q53GS9 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
USP39Q53GS9 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
USP39Q53GS9 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.11□□□□□ -0.15
USP39Q53GS9 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
USP39Q53GS9 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
USP39Q53GS9 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC14.11□□□□□ -0.15
USP39Q53GS9 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
USP39Q53GS9 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC14.11□□□□□ -0.15
USP39Q53GS9 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
USP39Q53GS9 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
USP39Q53GS9 KRT18P4-201ENST00000422599 1288 ntBASIC14.11□□□□□ -0.15
USP39Q53GS9 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
USP39Q53GS9 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC14.11□□□□□ -0.15
USP39Q53GS9 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC14.11□□□□□ -0.15
USP39Q53GS9 HNRNPA1P56-201ENST00000505767 954 ntBASIC14.11□□□□□ -0.15
USP39Q53GS9 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC14.11□□□□□ -0.15
USP39Q53GS9 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC14.11□□□□□ -0.15
USP39Q53GS9 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC14.11□□□□□ -0.15
USP39Q53GS9 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC14.11□□□□□ -0.15
USP39Q53GS9 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC14.11□□□□□ -0.15
USP39Q53GS9 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC14.11□□□□□ -0.15
USP39Q53GS9 CES1P2-201ENST00000566467 1242 ntBASIC14.11□□□□□ -0.15
USP39Q53GS9 AC005777.1-201ENST00000588332 187 ntBASIC14.11□□□□□ -0.15
USP39Q53GS9 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC14.11□□□□□ -0.15
USP39Q53GS9 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC14.11□□□□□ -0.15
USP39Q53GS9 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC14.11□□□□□ -0.15
USP39Q53GS9 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
USP39Q53GS9 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
USP39Q53GS9 AC089987.1-201ENST00000551654 2209 ntBASIC14.11□□□□□ -0.15
USP39Q53GS9 EML1-203ENST00000334192 4064 ntTSL 5 BASIC14.11□□□□□ -0.15
USP39Q53GS9 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
USP39Q53GS9 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC14.11□□□□□ -0.15
USP39Q53GS9 PDXDC2P-206ENST00000534700 1315 ntBASIC14.11□□□□□ -0.15
USP39Q53GS9 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC14.11□□□□□ -0.15
USP39Q53GS9 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
USP39Q53GS9 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
USP39Q53GS9 USP3-204ENST00000540797 5474 ntTSL 2 BASIC14.11□□□□□ -0.15
USP39Q53GS9 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
USP39Q53GS9 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USP39Q53GS9 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USP39Q53GS9 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC14.1□□□□□ -0.15
USP39Q53GS9 PHB-210ENST00000511832 1509 ntTSL 2 BASIC14.1□□□□□ -0.15
USP39Q53GS9 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms