Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AL589743.3-201ENST00000604121 517 ntBASIC22.28■■□□□ 1.16
CUX1P39880 RDM1-216ENST00000613308 779 ntAPPRIS ALT2 TSL 3 BASIC22.28■■□□□ 1.16
CUX1P39880 IFI27-214ENST00000620396 599 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
CUX1P39880 CD74-201ENST00000009530 981 ntAPPRIS P2 TSL 2 BASIC22.28■■□□□ 1.16
CUX1P39880 TUBB8-207ENST00000568866 1367 ntTSL 5 BASIC22.28■■□□□ 1.16
CUX1P39880 AL512488.1-201ENST00000433544 1671 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CUX1P39880 ZP4-201ENST00000366570 1799 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CUX1P39880 DDX19B-208ENST00000563392 1760 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CUX1P39880 MAFTRR-201ENST00000562921 1859 ntTSL 5 BASIC22.28■■□□□ 1.16
CUX1P39880 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC22.28■■□□□ 1.16
CUX1P39880 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CUX1P39880 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CUX1P39880 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
CUX1P39880 HNRNPLP1-201ENST00000421896 1501 ntBASIC22.28■■□□□ 1.16
CUX1P39880 CDC20P1-201ENST00000488829 1500 ntBASIC22.28■■□□□ 1.16
CUX1P39880 RAB8A-202ENST00000586682 1315 ntTSL 2 BASIC22.28■■□□□ 1.16
CUX1P39880 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CUX1P39880 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
CUX1P39880 ADD1-207ENST00000446856 3745 ntTSL 5 BASIC22.28■■□□□ 1.16
CUX1P39880 ALG11-204ENST00000616513 1983 ntTSL 2 BASIC22.28■■□□□ 1.16
CUX1P39880 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CUX1P39880 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
CUX1P39880 AC012485.1-201ENST00000456601 2509 ntTSL 2 BASIC22.27■■□□□ 1.16
CUX1P39880 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CUX1P39880 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
CUX1P39880 OPN4-201ENST00000241891 2308 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CUX1P39880 OR52L1-201ENST00000332249 1094 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
CUX1P39880 MIR193A-201ENST00000384882 88 ntBASIC22.27■■□□□ 1.16
CUX1P39880 SPTLC1P3-201ENST00000403408 259 ntBASIC22.27■■□□□ 1.16
CUX1P39880 PHBP3-201ENST00000412562 819 ntBASIC22.27■■□□□ 1.16
CUX1P39880 AL627095.1-201ENST00000414775 321 ntBASIC22.27■■□□□ 1.16
CUX1P39880 AC012513.2-201ENST00000441511 1137 ntBASIC22.27■■□□□ 1.16
CUX1P39880 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CUX1P39880 AC005042.2-201ENST00000449526 510 ntTSL 4 BASIC22.27■■□□□ 1.16
CUX1P39880 AC139795.1-201ENST00000499314 838 ntTSL 5 BASIC22.27■■□□□ 1.16
CUX1P39880 AL589666.1-201ENST00000503906 835 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
CUX1P39880 FAM213AP2-201ENST00000521579 683 ntBASIC22.27■■□□□ 1.16
CUX1P39880 AL391832.3-201ENST00000549744 846 ntTSL 3 BASIC22.27■■□□□ 1.16
CUX1P39880 AL157871.2-201ENST00000556212 552 ntTSL 3 BASIC22.27■■□□□ 1.16
CUX1P39880 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CUX1P39880 AL158032.2-201ENST00000616818 195 ntBASIC22.27■■□□□ 1.16
CUX1P39880 CHD2-218ENST00000629346 1249 ntTSL 5 BASIC22.27■■□□□ 1.16
CUX1P39880 GABARAPL1-219ENST00000629504 379 ntTSL 4 BASIC22.27■■□□□ 1.16
CUX1P39880 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CUX1P39880 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
CUX1P39880 EFEMP1-201ENST00000355426 1820 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CUX1P39880 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC22.27■■□□□ 1.16
CUX1P39880 CPEB1-213ENST00000617462 2068 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CUX1P39880 TRMT11-202ENST00000368332 1889 ntAPPRIS ALT1 TSL 2 BASIC22.27■■□□□ 1.16
CUX1P39880 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CUX1P39880 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC22.27■■□□□ 1.16
CUX1P39880 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
CUX1P39880 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
CUX1P39880 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.15
CUX1P39880 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
CUX1P39880 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC22.27■■□□□ 1.15
CUX1P39880 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
CUX1P39880 NIT1-202ENST00000368008 2081 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CUX1P39880 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
CUX1P39880 UGT1A6-202ENST00000373424 1128 ntTSL 2 BASIC22.26■■□□□ 1.15
CUX1P39880 MYH9-202ENST00000401701 789 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CUX1P39880 ST3GAL1P1-201ENST00000513810 1014 ntBASIC22.26■■□□□ 1.15
CUX1P39880 HNRNPA1P72-201ENST00000529511 967 ntBASIC22.26■■□□□ 1.15
CUX1P39880 AC090825.2-201ENST00000557959 739 ntBASIC22.26■■□□□ 1.15
CUX1P39880 AL390726.3-201ENST00000567428 635 ntTSL 5 BASIC22.26■■□□□ 1.15
CUX1P39880 SNORD55-201ENST00000581525 80 ntBASIC22.26■■□□□ 1.15
CUX1P39880 C17orf62-234ENST00000584503 584 ntTSL 2 BASIC22.26■■□□□ 1.15
CUX1P39880 AC012313.2-201ENST00000599952 1154 ntTSL 5 BASIC22.26■■□□□ 1.15
CUX1P39880 Metazoa_SRP.210-201ENST00000637921 244 ntBASIC22.26■■□□□ 1.15
CUX1P39880 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CUX1P39880 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CUX1P39880 GOLGA8IP-201ENST00000340249 1899 ntTSL 2 BASIC22.26■■□□□ 1.15
CUX1P39880 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CUX1P39880 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC22.26■■□□□ 1.15
CUX1P39880 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CUX1P39880 AC244154.1-201ENST00000620148 1555 ntBASIC22.26■■□□□ 1.15
CUX1P39880 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC22.26■■□□□ 1.15
CUX1P39880 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
CUX1P39880 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC22.26■■□□□ 1.15
CUX1P39880 ANP32B-201ENST00000339399 1463 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CUX1P39880 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC22.26■■□□□ 1.15
CUX1P39880 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC22.26■■□□□ 1.15
CUX1P39880 ZFYVE19-202ENST00000336455 1784 ntTSL 2 BASIC22.26■■□□□ 1.15
CUX1P39880 PRR3-201ENST00000376557 1797 ntTSL 2 BASIC22.26■■□□□ 1.15
CUX1P39880 TPT1-201ENST00000309246 1008 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CUX1P39880 AP000487.2-201ENST00000324630 394 ntTSL 3 BASIC22.26■■□□□ 1.15
CUX1P39880 ROPN1L-AS1-201ENST00000513037 189 ntTSL 2 BASIC22.26■■□□□ 1.15
CUX1P39880 Z93930.2-203ENST00000585003 516 ntBASIC22.26■■□□□ 1.15
CUX1P39880 FAM231B-201ENST00000600179 510 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
CUX1P39880 FAM69A-204ENST00000615519 865 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CUX1P39880 AC073592.10-201ENST00000624789 597 ntBASIC22.26■■□□□ 1.15
CUX1P39880 SLCO2A1-208ENST00000493729 1918 ntTSL 5 BASIC22.26■■□□□ 1.15
CUX1P39880 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC22.25■■□□□ 1.15
CUX1P39880 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC22.25■■□□□ 1.15
CUX1P39880 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
CUX1P39880 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CUX1P39880 AC023830.3-201ENST00000612995 1455 ntBASIC22.25■■□□□ 1.15
CUX1P39880 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CUX1P39880 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
CUX1P39880 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC22.25■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms