Protein–RNA interactions for Protein: Q96LD4

TRIM47, Tripartite motif-containing protein 47, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47Q96LD4 IGHEP1-201ENST00000521393 651 ntBASIC16.26■□□□□ 0.19
TRIM47Q96LD4 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM47Q96LD4 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM47Q96LD4 EMC4-208ENST00000559078 599 ntTSL 3 BASIC16.26■□□□□ 0.19
TRIM47Q96LD4 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC16.26■□□□□ 0.19
TRIM47Q96LD4 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC16.26■□□□□ 0.19
TRIM47Q96LD4 AP005264.5-201ENST00000590066 467 ntBASIC16.26■□□□□ 0.19
TRIM47Q96LD4 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC16.26■□□□□ 0.19
TRIM47Q96LD4 AL359091.4-201ENST00000610052 409 ntBASIC16.26■□□□□ 0.19
TRIM47Q96LD4 PTPN20CP-201ENST00000614090 920 ntBASIC16.26■□□□□ 0.19
TRIM47Q96LD4 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC16.26■□□□□ 0.19
TRIM47Q96LD4 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM47Q96LD4 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM47Q96LD4 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM47Q96LD4 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
TRIM47Q96LD4 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM47Q96LD4 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM47Q96LD4 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
TRIM47Q96LD4 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM47Q96LD4 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM47Q96LD4 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM47Q96LD4 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
TRIM47Q96LD4 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM47Q96LD4 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC16.26■□□□□ 0.19
TRIM47Q96LD4 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM47Q96LD4 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
TRIM47Q96LD4 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM47Q96LD4 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 RET-205ENST00000615310 4337 ntTSL 5 BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 AC006987.1-201ENST00000413610 527 ntBASIC16.25■□□□□ 0.19
TRIM47Q96LD4 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 RNLS-203ENST00000437752 525 ntTSL 2 BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 CHCHD2P2-201ENST00000503744 321 ntBASIC16.25■□□□□ 0.19
TRIM47Q96LD4 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 COQ4-204ENST00000608951 781 ntTSL 2 BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 AC091769.1-201ENST00000619576 568 ntBASIC16.25■□□□□ 0.19
TRIM47Q96LD4 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 ODCP-201ENST00000459650 1639 ntBASIC16.25■□□□□ 0.19
TRIM47Q96LD4 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 KRT8P24-201ENST00000560290 1559 ntBASIC16.25■□□□□ 0.19
TRIM47Q96LD4 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 HPD-204ENST00000543163 1709 ntTSL 5 BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM47Q96LD4 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 AL512599.1-201ENST00000430724 685 ntBASIC16.24■□□□□ 0.19
TRIM47Q96LD4 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 SORD2P-201ENST00000558556 1069 ntBASIC16.24■□□□□ 0.19
TRIM47Q96LD4 AC018846.1-201ENST00000568231 183 ntBASIC16.24■□□□□ 0.19
TRIM47Q96LD4 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 RN7SL121P-201ENST00000584223 273 ntBASIC16.24■□□□□ 0.19
TRIM47Q96LD4 APOC1-209ENST00000592885 562 ntTSL 3 BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM47Q96LD4 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms