Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
BDNFP23560 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
BDNFP23560 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
BDNFP23560 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
BDNFP23560 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
BDNFP23560 OS9-207ENST00000439210 1946 ntTSL 2 BASIC14.62□□□□□ -0.07
BDNFP23560 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
BDNFP23560 TK2-221ENST00000620035 5060 ntTSL 2 BASIC14.62□□□□□ -0.07
BDNFP23560 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
BDNFP23560 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
BDNFP23560 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC14.62□□□□□ -0.07
BDNFP23560 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
BDNFP23560 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
BDNFP23560 ZIK1-201ENST00000307468 2510 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
BDNFP23560 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
BDNFP23560 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
BDNFP23560 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
BDNFP23560 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC14.62□□□□□ -0.07
BDNFP23560 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
BDNFP23560 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
BDNFP23560 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
BDNFP23560 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
BDNFP23560 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
BDNFP23560 BAK1P1-201ENST00000317045 636 ntBASIC14.62□□□□□ -0.07
BDNFP23560 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
BDNFP23560 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
BDNFP23560 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
BDNFP23560 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC14.62□□□□□ -0.07
BDNFP23560 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
BDNFP23560 SSR4-202ENST00000370085 526 ntTSL 2 BASIC14.62□□□□□ -0.07
BDNFP23560 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
BDNFP23560 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
BDNFP23560 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
BDNFP23560 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC14.62□□□□□ -0.07
BDNFP23560 AC108734.2-201ENST00000420887 1069 ntBASIC14.62□□□□□ -0.07
BDNFP23560 KRT18P62-201ENST00000446618 1287 ntBASIC14.62□□□□□ -0.07
BDNFP23560 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
BDNFP23560 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC14.62□□□□□ -0.07
BDNFP23560 AC084752.1-201ENST00000509766 622 ntBASIC14.62□□□□□ -0.07
BDNFP23560 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
BDNFP23560 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC14.62□□□□□ -0.07
BDNFP23560 LINC02369-202ENST00000540745 801 ntTSL 5 BASIC14.62□□□□□ -0.07
BDNFP23560 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC14.62□□□□□ -0.07
BDNFP23560 KRT18P8-201ENST00000581937 1246 ntBASIC14.62□□□□□ -0.07
BDNFP23560 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC14.62□□□□□ -0.07
BDNFP23560 AC025271.4-201ENST00000621477 1726 ntBASIC14.62□□□□□ -0.07
BDNFP23560 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
BDNFP23560 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
BDNFP23560 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC14.62□□□□□ -0.07
BDNFP23560 Z98885.3-201ENST00000624882 1757 ntBASIC14.62□□□□□ -0.07
BDNFP23560 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
BDNFP23560 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC14.62□□□□□ -0.07
BDNFP23560 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
BDNFP23560 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC14.62□□□□□ -0.07
BDNFP23560 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
BDNFP23560 AC079781.5-202ENST00000641784 3743 ntBASIC14.62□□□□□ -0.07
BDNFP23560 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
BDNFP23560 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
BDNFP23560 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
BDNFP23560 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
BDNFP23560 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
BDNFP23560 AC005014.1-201ENST00000432006 2976 ntBASIC14.61□□□□□ -0.07
BDNFP23560 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
BDNFP23560 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
BDNFP23560 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
BDNFP23560 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
BDNFP23560 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC14.61□□□□□ -0.07
BDNFP23560 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
BDNFP23560 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
BDNFP23560 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
BDNFP23560 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
BDNFP23560 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
BDNFP23560 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
BDNFP23560 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
BDNFP23560 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
BDNFP23560 DRD3-203ENST00000460779 1557 ntAPPRIS P3 TSL 2 BASIC14.61□□□□□ -0.07
BDNFP23560 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
BDNFP23560 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
BDNFP23560 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC14.61□□□□□ -0.07
BDNFP23560 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC14.61□□□□□ -0.07
BDNFP23560 SRC-202ENST00000373558 4304 ntTSL 5 BASIC14.61□□□□□ -0.07
BDNFP23560 AC106827.1-201ENST00000366454 431 ntBASIC14.61□□□□□ -0.07
BDNFP23560 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC14.61□□□□□ -0.07
BDNFP23560 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
BDNFP23560 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC14.61□□□□□ -0.07
BDNFP23560 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
BDNFP23560 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC14.61□□□□□ -0.07
BDNFP23560 GNG10P1-201ENST00000452289 199 ntBASIC14.61□□□□□ -0.07
BDNFP23560 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC14.61□□□□□ -0.07
BDNFP23560 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC14.61□□□□□ -0.07
BDNFP23560 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC14.61□□□□□ -0.07
BDNFP23560 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC14.61□□□□□ -0.07
BDNFP23560 AC090617.4-201ENST00000572404 422 ntTSL 3 BASIC14.61□□□□□ -0.07
BDNFP23560 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC14.61□□□□□ -0.07
BDNFP23560 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC14.61□□□□□ -0.07
BDNFP23560 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
BDNFP23560 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
BDNFP23560 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
BDNFP23560 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC14.61□□□□□ -0.07
BDNFP23560 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 114.5 ms