Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
COL4A3BPQ9Y5P4 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
COL4A3BPQ9Y5P4 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC15.56■□□□□ 0.08
COL4A3BPQ9Y5P4 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL4A3BPQ9Y5P4 AC093462.1-201ENST00000621167 1683 ntBASIC15.56■□□□□ 0.08
COL4A3BPQ9Y5P4 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC15.56■□□□□ 0.08
COL4A3BPQ9Y5P4 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
COL4A3BPQ9Y5P4 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
COL4A3BPQ9Y5P4 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC15.56■□□□□ 0.08
COL4A3BPQ9Y5P4 AC020658.7-201ENST00000624274 2442 ntBASIC15.56■□□□□ 0.08
COL4A3BPQ9Y5P4 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL4A3BPQ9Y5P4 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC15.56■□□□□ 0.08
COL4A3BPQ9Y5P4 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL4A3BPQ9Y5P4 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL4A3BPQ9Y5P4 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL4A3BPQ9Y5P4 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC15.56■□□□□ 0.08
COL4A3BPQ9Y5P4 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL4A3BPQ9Y5P4 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL4A3BPQ9Y5P4 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
COL4A3BPQ9Y5P4 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL4A3BPQ9Y5P4 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL4A3BPQ9Y5P4 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 PTENP1-202ENST00000532280 3996 ntBASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 AC025183.3-201ENST00000623526 1482 ntBASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 FTX-216ENST00000638985 1367 ntTSL 5 BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 HIST2H2BA-201ENST00000412169 381 ntBASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 RN7SL788P-201ENST00000460504 316 ntBASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 NUDT4P2-201ENST00000578341 546 ntBASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 MIR3180-2-201ENST00000581748 88 ntBASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 DMBT1P1-203ENST00000636837 4628 ntBASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A3BPQ9Y5P4 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 AC009474.1-201ENST00000455096 1565 ntBASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 TCAF1P1-201ENST00000414990 2232 ntBASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms