Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLDN6P56747 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CLDN6P56747 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLDN6P56747 CAMP-201ENST00000296435 745 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLDN6P56747 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLDN6P56747 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC13.31□□□□□ -0.28
CLDN6P56747 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC13.31□□□□□ -0.28
CLDN6P56747 HCRTR1-201ENST00000373705 1170 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CLDN6P56747 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
CLDN6P56747 ABCD1P4-201ENST00000399687 604 ntBASIC13.31□□□□□ -0.28
CLDN6P56747 ATP5J-202ENST00000400087 826 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
CLDN6P56747 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC13.31□□□□□ -0.28
CLDN6P56747 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CLDN6P56747 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC13.31□□□□□ -0.28
CLDN6P56747 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC13.31□□□□□ -0.28
CLDN6P56747 PILRA-205ENST00000453419 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLDN6P56747 MIR2278-201ENST00000516344 96 ntBASIC13.31□□□□□ -0.28
CLDN6P56747 GPX3-202ENST00000517973 612 ntTSL 3 BASIC13.31□□□□□ -0.28
CLDN6P56747 C11orf58-207ENST00000525684 575 ntTSL 2 BASIC13.31□□□□□ -0.28
CLDN6P56747 C11orf58-209ENST00000528634 776 ntTSL 5 BASIC13.31□□□□□ -0.28
CLDN6P56747 BMF-206ENST00000558774 671 ntTSL 3 BASIC13.31□□□□□ -0.28
CLDN6P56747 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC13.31□□□□□ -0.28
CLDN6P56747 AC079414.2-201ENST00000567157 1104 ntBASIC13.31□□□□□ -0.28
CLDN6P56747 MED11-202ENST00000573708 802 ntTSL 2 BASIC13.31□□□□□ -0.28
CLDN6P56747 MIR4746-201ENST00000579802 71 ntBASIC13.31□□□□□ -0.28
CLDN6P56747 USP32P3-202ENST00000583574 611 ntTSL 3 BASIC13.31□□□□□ -0.28
CLDN6P56747 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC13.31□□□□□ -0.28
CLDN6P56747 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC13.31□□□□□ -0.28
CLDN6P56747 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC13.31□□□□□ -0.28
CLDN6P56747 NIN-202ENST00000324330 4364 ntTSL 5 BASIC13.31□□□□□ -0.28
CLDN6P56747 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLDN6P56747 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLDN6P56747 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLDN6P56747 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLDN6P56747 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC13.31□□□□□ -0.28
CLDN6P56747 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC13.31□□□□□ -0.28
CLDN6P56747 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLDN6P56747 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC13.31□□□□□ -0.28
CLDN6P56747 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLDN6P56747 WASH7P-201ENST00000488147 1351 ntBASIC13.31□□□□□ -0.28
CLDN6P56747 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
CLDN6P56747 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC13.31□□□□□ -0.28
CLDN6P56747 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC13.3□□□□□ -0.28
CLDN6P56747 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
CLDN6P56747 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLDN6P56747 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC13.3□□□□□ -0.28
CLDN6P56747 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLDN6P56747 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CLDN6P56747 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC13.3□□□□□ -0.28
CLDN6P56747 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC13.3□□□□□ -0.28
CLDN6P56747 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLDN6P56747 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLDN6P56747 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLDN6P56747 RPL13AP3-202ENST00000494676 1473 ntBASIC13.3□□□□□ -0.28
CLDN6P56747 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CLDN6P56747 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CLDN6P56747 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLDN6P56747 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CLDN6P56747 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC13.3□□□□□ -0.28
CLDN6P56747 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLDN6P56747 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLDN6P56747 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLDN6P56747 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLDN6P56747 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC13.3□□□□□ -0.28
CLDN6P56747 EEF1DP5-201ENST00000431410 772 ntBASIC13.3□□□□□ -0.28
CLDN6P56747 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC13.3□□□□□ -0.28
CLDN6P56747 BX322557.2-201ENST00000445242 379 ntTSL 3 BASIC13.3□□□□□ -0.28
CLDN6P56747 HIST1H2APS2-201ENST00000454426 370 ntBASIC13.3□□□□□ -0.28
CLDN6P56747 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC13.3□□□□□ -0.28
CLDN6P56747 TBC1D3P6-201ENST00000505954 962 ntBASIC13.3□□□□□ -0.28
CLDN6P56747 AAMDC-207ENST00000527134 693 ntTSL 3 BASIC13.3□□□□□ -0.28
CLDN6P56747 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC13.3□□□□□ -0.28
CLDN6P56747 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC13.3□□□□□ -0.28
CLDN6P56747 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC13.3□□□□□ -0.28
CLDN6P56747 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC13.3□□□□□ -0.28
CLDN6P56747 RN7SL605P-201ENST00000577229 281 ntBASIC13.3□□□□□ -0.28
CLDN6P56747 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC13.3□□□□□ -0.28
CLDN6P56747 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
CLDN6P56747 MCM8-AS1-201ENST00000613522 983 ntTSL 2 BASIC13.3□□□□□ -0.28
CLDN6P56747 BX322534.1-201ENST00000635574 241 ntBASIC13.3□□□□□ -0.28
CLDN6P56747 AC215524.1-201ENST00000635696 241 ntBASIC13.3□□□□□ -0.28
CLDN6P56747 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLDN6P56747 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC13.3□□□□□ -0.28
CLDN6P56747 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC13.3□□□□□ -0.28
CLDN6P56747 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLDN6P56747 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC13.3□□□□□ -0.28
CLDN6P56747 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
CLDN6P56747 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
CLDN6P56747 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLDN6P56747 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC13.3□□□□□ -0.28
CLDN6P56747 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLDN6P56747 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC13.3□□□□□ -0.28
CLDN6P56747 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC13.3□□□□□ -0.28
CLDN6P56747 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLDN6P56747 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLDN6P56747 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC13.3□□□□□ -0.28
CLDN6P56747 RN7SL832P-201ENST00000607781 1756 ntBASIC13.3□□□□□ -0.28
CLDN6P56747 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC13.3□□□□□ -0.28
CLDN6P56747 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLDN6P56747 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 469.2 ms