Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CIITAP33076 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CIITAP33076 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CIITAP33076 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC15.57■□□□□ 0.08
CIITAP33076 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC15.57■□□□□ 0.08
CIITAP33076 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC15.57■□□□□ 0.08
CIITAP33076 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CIITAP33076 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CIITAP33076 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CIITAP33076 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CIITAP33076 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CIITAP33076 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
CIITAP33076 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CIITAP33076 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC15.56■□□□□ 0.08
CIITAP33076 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CIITAP33076 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC15.56■□□□□ 0.08
CIITAP33076 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
CIITAP33076 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC15.56■□□□□ 0.08
CIITAP33076 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
CIITAP33076 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CIITAP33076 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CIITAP33076 FUK-202ENST00000378912 3925 ntTSL 2 BASIC15.56■□□□□ 0.08
CIITAP33076 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC15.56■□□□□ 0.08
CIITAP33076 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CIITAP33076 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC15.56■□□□□ 0.08
CIITAP33076 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
CIITAP33076 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CIITAP33076 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
CIITAP33076 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CIITAP33076 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC15.56■□□□□ 0.08
CIITAP33076 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC15.56■□□□□ 0.08
CIITAP33076 LINP1-201ENST00000417112 917 ntTSL 2 BASIC15.56■□□□□ 0.08
CIITAP33076 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC15.56■□□□□ 0.08
CIITAP33076 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CIITAP33076 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC15.56■□□□□ 0.08
CIITAP33076 CHIC2-204ENST00000512964 711 ntTSL 5 BASIC15.56■□□□□ 0.08
CIITAP33076 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
CIITAP33076 GMFG-209ENST00000600322 622 ntTSL 5 BASIC15.56■□□□□ 0.08
CIITAP33076 AL118522.1-201ENST00000611368 560 ntBASIC15.56■□□□□ 0.08
CIITAP33076 AC026120.2-201ENST00000617239 309 ntBASIC15.56■□□□□ 0.08
CIITAP33076 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC15.56■□□□□ 0.08
CIITAP33076 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
CIITAP33076 LINC00969-321ENST00000629990 806 ntTSL 5 BASIC15.56■□□□□ 0.08
CIITAP33076 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CIITAP33076 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
CIITAP33076 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
CIITAP33076 AC139795.2-201ENST00000499900 1751 ntTSL 2 BASIC15.56■□□□□ 0.08
CIITAP33076 LINC01114-202ENST00000424321 2112 ntTSL 2 BASIC15.56■□□□□ 0.08
CIITAP33076 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CIITAP33076 POLL-206ENST00000370172 2308 ntTSL 2 BASIC15.56■□□□□ 0.08
CIITAP33076 AGAP12P-201ENST00000585227 2359 ntBASIC15.56■□□□□ 0.08
CIITAP33076 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC15.56■□□□□ 0.08
CIITAP33076 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
CIITAP33076 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CIITAP33076 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
CIITAP33076 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC15.56■□□□□ 0.08
CIITAP33076 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
CIITAP33076 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC15.56■□□□□ 0.08
CIITAP33076 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CIITAP33076 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
CIITAP33076 MAP7D2-204ENST00000452324 2233 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
CIITAP33076 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CIITAP33076 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC15.55■□□□□ 0.08
CIITAP33076 DDC-214ENST00000622873 1839 ntTSL 3 BASIC15.55■□□□□ 0.08
CIITAP33076 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
CIITAP33076 SELENBP1-208ENST00000447402 1530 ntTSL 2 BASIC15.55■□□□□ 0.08
CIITAP33076 AC021305.1-201ENST00000520656 1514 ntBASIC15.55■□□□□ 0.08
CIITAP33076 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
CIITAP33076 AC024075.2-201ENST00000598112 1473 ntBASIC15.55■□□□□ 0.08
CIITAP33076 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC15.55■□□□□ 0.08
CIITAP33076 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CIITAP33076 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CIITAP33076 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CIITAP33076 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CIITAP33076 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CIITAP33076 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CIITAP33076 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CIITAP33076 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CIITAP33076 RPL17P11-201ENST00000417593 544 ntBASIC15.55■□□□□ 0.08
CIITAP33076 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC15.55■□□□□ 0.08
CIITAP33076 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC15.55■□□□□ 0.08
CIITAP33076 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC15.55■□□□□ 0.08
CIITAP33076 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
CIITAP33076 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CIITAP33076 IFI27L1-211ENST00000557066 580 ntTSL 3 BASIC15.55■□□□□ 0.08
CIITAP33076 AC095350.1-204ENST00000585405 616 ntTSL 5 BASIC15.55■□□□□ 0.08
CIITAP33076 RETN-203ENST00000629642 400 ntTSL 5 BASIC15.55■□□□□ 0.08
CIITAP33076 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CIITAP33076 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CIITAP33076 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CIITAP33076 STK25-235ENST00000543554 2556 ntTSL 2 BASIC15.55■□□□□ 0.08
CIITAP33076 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC15.55■□□□□ 0.08
CIITAP33076 EML1-203ENST00000334192 4064 ntTSL 5 BASIC15.55■□□□□ 0.08
CIITAP33076 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
CIITAP33076 FAM86C1-202ENST00000359244 2110 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
CIITAP33076 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
CIITAP33076 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CIITAP33076 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
CIITAP33076 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CIITAP33076 ALG11-204ENST00000616513 1983 ntTSL 2 BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms