Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
BDNFP23560 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
BDNFP23560 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC14.64□□□□□ -0.07
BDNFP23560 DKKL1P1-201ENST00000400550 698 ntBASIC14.64□□□□□ -0.07
BDNFP23560 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC14.64□□□□□ -0.07
BDNFP23560 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC14.64□□□□□ -0.07
BDNFP23560 ACTG1P19-201ENST00000418987 1116 ntBASIC14.64□□□□□ -0.07
BDNFP23560 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC14.64□□□□□ -0.07
BDNFP23560 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC14.64□□□□□ -0.07
BDNFP23560 RN7SL23P-201ENST00000484055 275 ntBASIC14.64□□□□□ -0.07
BDNFP23560 PPIA-208ENST00000489459 907 ntTSL 2 BASIC14.64□□□□□ -0.07
BDNFP23560 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC14.64□□□□□ -0.07
BDNFP23560 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC14.64□□□□□ -0.07
BDNFP23560 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 PPIA-210ENST00000620047 827 ntTSL 5 BASIC14.64□□□□□ -0.07
BDNFP23560 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC14.64□□□□□ -0.07
BDNFP23560 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
BDNFP23560 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC14.64□□□□□ -0.07
BDNFP23560 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 AC072061.1-201ENST00000569710 2234 ntBASIC14.64□□□□□ -0.07
BDNFP23560 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
BDNFP23560 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
BDNFP23560 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
BDNFP23560 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
BDNFP23560 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
BDNFP23560 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
BDNFP23560 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
BDNFP23560 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC14.63□□□□□ -0.07
BDNFP23560 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
BDNFP23560 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
BDNFP23560 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
BDNFP23560 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC14.63□□□□□ -0.07
BDNFP23560 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
BDNFP23560 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
BDNFP23560 AC021305.1-201ENST00000520656 1514 ntBASIC14.63□□□□□ -0.07
BDNFP23560 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
BDNFP23560 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
BDNFP23560 RET-205ENST00000615310 4337 ntTSL 5 BASIC14.63□□□□□ -0.07
BDNFP23560 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC14.63□□□□□ -0.07
BDNFP23560 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
BDNFP23560 SALL4P6-201ENST00000429385 1691 ntBASIC14.63□□□□□ -0.07
BDNFP23560 AC040160.2-201ENST00000623816 1675 ntBASIC14.63□□□□□ -0.07
BDNFP23560 RIDA-201ENST00000254878 1057 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
BDNFP23560 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
BDNFP23560 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
BDNFP23560 GGTLC4P-201ENST00000402176 664 ntBASIC14.63□□□□□ -0.07
BDNFP23560 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
BDNFP23560 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
BDNFP23560 AC073210.1-201ENST00000414799 232 ntBASIC14.63□□□□□ -0.07
BDNFP23560 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC14.63□□□□□ -0.07
BDNFP23560 AC007279.1-201ENST00000448547 837 ntBASIC14.63□□□□□ -0.07
BDNFP23560 AC006529.1-201ENST00000459978 637 ntBASIC14.63□□□□□ -0.07
BDNFP23560 LINC00634-202ENST00000505157 222 ntBASIC14.63□□□□□ -0.07
BDNFP23560 CTBP2P4-201ENST00000513884 920 ntBASIC14.63□□□□□ -0.07
BDNFP23560 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC14.63□□□□□ -0.07
BDNFP23560 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
BDNFP23560 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC14.63□□□□□ -0.07
BDNFP23560 AL118522.1-201ENST00000611368 560 ntBASIC14.63□□□□□ -0.07
BDNFP23560 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
BDNFP23560 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC14.63□□□□□ -0.07
BDNFP23560 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC14.63□□□□□ -0.07
BDNFP23560 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
BDNFP23560 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14.63□□□□□ -0.07
BDNFP23560 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
BDNFP23560 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
BDNFP23560 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC14.63□□□□□ -0.07
BDNFP23560 AC089987.1-201ENST00000551654 2209 ntBASIC14.63□□□□□ -0.07
BDNFP23560 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC14.63□□□□□ -0.07
BDNFP23560 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC14.63□□□□□ -0.07
BDNFP23560 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
BDNFP23560 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC14.63□□□□□ -0.07
BDNFP23560 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
BDNFP23560 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
BDNFP23560 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
BDNFP23560 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC14.63□□□□□ -0.07
BDNFP23560 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
BDNFP23560 AC023794.5-201ENST00000564380 2157 ntBASIC14.63□□□□□ -0.07
BDNFP23560 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
BDNFP23560 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
BDNFP23560 STK3-218ENST00000617590 2485 ntTSL 5 BASIC14.63□□□□□ -0.07
BDNFP23560 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms