Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 PPATP1-201ENST00000496669 1547 ntBASIC13.82□□□□□ -0.2
VCANP13611 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC13.82□□□□□ -0.2
VCANP13611 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VCANP13611 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VCANP13611 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC13.82□□□□□ -0.2
VCANP13611 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VCANP13611 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC13.82□□□□□ -0.2
VCANP13611 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC13.82□□□□□ -0.2
VCANP13611 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VCANP13611 CPPED1-203ENST00000433677 1993 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
VCANP13611 TMIGD1-201ENST00000328886 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VCANP13611 RN7SKP245-201ENST00000364025 320 ntBASIC13.82□□□□□ -0.2
VCANP13611 S100B-202ENST00000367071 971 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
VCANP13611 PQLC1P1-201ENST00000434950 429 ntBASIC13.82□□□□□ -0.2
VCANP13611 PGAM1P2-201ENST00000436071 725 ntBASIC13.82□□□□□ -0.2
VCANP13611 AC104123.1-201ENST00000502645 473 ntTSL 5 BASIC13.82□□□□□ -0.2
VCANP13611 TRMT112P6-201ENST00000599234 372 ntBASIC13.82□□□□□ -0.2
VCANP13611 AL355353.1-201ENST00000604014 330 ntBASIC13.82□□□□□ -0.2
VCANP13611 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
VCANP13611 LINC01837-201ENST00000590021 1320 ntTSL 5 BASIC13.82□□□□□ -0.2
VCANP13611 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC13.82□□□□□ -0.2
VCANP13611 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
VCANP13611 AL928654.5-201ENST00000624831 2501 ntBASIC13.82□□□□□ -0.2
VCANP13611 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VCANP13611 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VCANP13611 EDDM3B-201ENST00000326783 896 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VCANP13611 FTH1P19-201ENST00000402402 528 ntBASIC13.82□□□□□ -0.2
VCANP13611 AP001625.3-201ENST00000416179 449 ntTSL 2 BASIC13.82□□□□□ -0.2
VCANP13611 IGLCOR22-1-201ENST00000523725 316 ntBASIC13.82□□□□□ -0.2
VCANP13611 AC103736.1-201ENST00000524410 605 ntTSL 3 BASIC13.82□□□□□ -0.2
VCANP13611 ZNF674-AS1-202ENST00000609887 672 ntTSL 5 BASIC13.82□□□□□ -0.2
VCANP13611 AL669831.6-201ENST00000635557 837 ntBASIC13.82□□□□□ -0.2
VCANP13611 SPAG8-202ENST00000396638 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
VCANP13611 CD1A-201ENST00000289429 2096 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VCANP13611 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
VCANP13611 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC13.82□□□□□ -0.2
VCANP13611 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
VCANP13611 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
VCANP13611 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
VCANP13611 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC13.82□□□□□ -0.2
VCANP13611 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
VCANP13611 RIDA-201ENST00000254878 1057 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VCANP13611 AL138902.1-201ENST00000437965 856 ntTSL 3 BASIC13.82□□□□□ -0.2
VCANP13611 AL390061.1-201ENST00000457804 293 ntTSL 2 BASIC13.82□□□□□ -0.2
VCANP13611 AP003071.1-201ENST00000567925 622 ntTSL 3 BASIC13.82□□□□□ -0.2
VCANP13611 AL358215.3-201ENST00000640695 1186 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
VCANP13611 ECI2-207ENST00000465828 1548 ntTSL 5 BASIC13.82□□□□□ -0.2
VCANP13611 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC13.82□□□□□ -0.2
VCANP13611 M1AP-201ENST00000290536 2543 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
VCANP13611 CCDC89-201ENST00000316398 1412 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
VCANP13611 PSMD13-201ENST00000352303 1427 ntTSL 5 BASIC13.81□□□□□ -0.2
VCANP13611 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
VCANP13611 LINC01515-201ENST00000433152 1339 ntTSL 5 BASIC13.81□□□□□ -0.2
VCANP13611 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
VCANP13611 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
VCANP13611 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC13.81□□□□□ -0.2
VCANP13611 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
VCANP13611 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
VCANP13611 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
VCANP13611 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
VCANP13611 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC13.81□□□□□ -0.2
VCANP13611 GPR141-201ENST00000334425 918 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
VCANP13611 TIPRL-201ENST00000367830 727 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
VCANP13611 MIEF2-206ENST00000578174 589 ntTSL 4 BASIC13.81□□□□□ -0.2
VCANP13611 MAP3K14-205ENST00000617331 1049 ntTSL 5 BASIC13.81□□□□□ -0.2
VCANP13611 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
VCANP13611 POM121L14P-201ENST00000406100 1558 ntBASIC13.81□□□□□ -0.2
VCANP13611 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
VCANP13611 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
VCANP13611 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
VCANP13611 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
VCANP13611 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
VCANP13611 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
VCANP13611 PRSS3-203ENST00000379405 834 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
VCANP13611 SERF2-205ENST00000403425 690 ntTSL 2 BASIC13.81□□□□□ -0.2
VCANP13611 IL32-230ENST00000551122 733 ntAPPRIS ALT2 TSL 3 BASIC13.81□□□□□ -0.2
VCANP13611 AC103740.2-201ENST00000557900 1225 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
VCANP13611 AC021594.2-201ENST00000592499 527 ntTSL 3 BASIC13.81□□□□□ -0.2
VCANP13611 AC010524.1-201ENST00000596488 494 ntTSL 3 BASIC13.81□□□□□ -0.2
VCANP13611 FXYD3-207ENST00000604255 780 ntTSL 5 BASIC13.81□□□□□ -0.2
VCANP13611 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
VCANP13611 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
VCANP13611 SPATA22-203ENST00000397168 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
VCANP13611 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
VCANP13611 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
VCANP13611 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
VCANP13611 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
VCANP13611 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
VCANP13611 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC13.81□□□□□ -0.2
VCANP13611 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
VCANP13611 CXorf40B-201ENST00000355203 1067 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
VCANP13611 UBIAD1-201ENST00000376804 825 ntTSL 2 BASIC13.8□□□□□ -0.2
VCANP13611 SYCP3-203ENST00000392927 1120 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
VCANP13611 FHIT-205ENST00000476844 1033 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
VCANP13611 RN7SL307P-201ENST00000490342 295 ntBASIC13.8□□□□□ -0.2
VCANP13611 IGKV1-8-201ENST00000495489 398 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
VCANP13611 AC023886.1-202ENST00000504009 477 ntTSL 3 BASIC13.8□□□□□ -0.2
VCANP13611 SNHG15-209ENST00000584686 541 ntTSL 3 BASIC13.8□□□□□ -0.2
VCANP13611 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC13.8□□□□□ -0.2
VCANP13611 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms