Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC21.27■■□□□ 1
VPS8Q8N3P4 GCOM1-214ENST00000587652 2329 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
VPS8Q8N3P4 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VPS8Q8N3P4 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
VPS8Q8N3P4 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
VPS8Q8N3P4 SLC26A8-202ENST00000394602 3144 ntTSL 1 (best) BASIC21.27■■□□□ 1
VPS8Q8N3P4 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC21.27■■□□□ 1
VPS8Q8N3P4 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VPS8Q8N3P4 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC21.27■■□□□ 1
VPS8Q8N3P4 AC136604.1-202ENST00000425471 771 ntBASIC21.27■■□□□ 1
VPS8Q8N3P4 AL021391.1-201ENST00000454439 545 ntTSL 4 BASIC21.27■■□□□ 1
VPS8Q8N3P4 NDUFB2P1-201ENST00000506966 295 ntBASIC21.27■■□□□ 1
VPS8Q8N3P4 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC21.27■■□□□ 1
VPS8Q8N3P4 URAHP-205ENST00000610227 398 ntBASIC21.27■■□□□ 1
VPS8Q8N3P4 ALDOA-229ENST00000636698 420 ntTSL 3 BASIC21.27■■□□□ 1
VPS8Q8N3P4 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC21.27■■□□□ 1
VPS8Q8N3P4 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC21.27■■□□□ 1
VPS8Q8N3P4 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
VPS8Q8N3P4 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
VPS8Q8N3P4 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC21.27■□□□□ 0.99
VPS8Q8N3P4 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC21.27■□□□□ 0.99
VPS8Q8N3P4 HRH2-202ENST00000377291 2561 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
VPS8Q8N3P4 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 CYP2J2-201ENST00000371204 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 Z97653.2-201ENST00000623057 1418 ntBASIC21.26■□□□□ 0.99
VPS8Q8N3P4 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 AC073862.5-201ENST00000624129 2027 ntBASIC21.26■□□□□ 0.99
VPS8Q8N3P4 CPA5-203ENST00000461828 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 AC135506.1-201ENST00000603877 1799 ntBASIC21.26■□□□□ 0.99
VPS8Q8N3P4 ADD1-207ENST00000446856 3745 ntTSL 5 BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 IFITM1-202ENST00000408968 855 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 PTK2-225ENST00000520892 571 ntTSL 4 BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 AC023968.2-201ENST00000560593 1049 ntBASIC21.26■□□□□ 0.99
VPS8Q8N3P4 AP003071.1-201ENST00000567925 622 ntTSL 3 BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 FO393412.1-201ENST00000619841 382 ntBASIC21.26■□□□□ 0.99
VPS8Q8N3P4 SNORA50D-202ENST00000627561 132 ntBASIC21.26■□□□□ 0.99
VPS8Q8N3P4 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 KIR3DL1-203ENST00000391728 1871 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 PPP1R8-202ENST00000311772 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC21.26■□□□□ 0.99
VPS8Q8N3P4 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 ZNF485-202ENST00000374435 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 AL031587.5-201ENST00000624344 1849 ntBASIC21.25■□□□□ 0.99
VPS8Q8N3P4 PRAME-202ENST00000398743 2196 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 CHMP4C-201ENST00000297265 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 ACOT6-201ENST00000381139 1004 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 MIR1301-201ENST00000408518 82 ntBASIC21.25■□□□□ 0.99
VPS8Q8N3P4 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 ESRRAP2-203ENST00000453309 822 ntTSL 5 BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 LINC01836-201ENST00000586061 829 ntTSL 3 BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 AC007193.3-201ENST00000598616 188 ntTSL 3 BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 SMYD5-209ENST00000629411 246 ntTSL 5 BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 TRIB1-203ENST00000520847 1332 ntTSL 2 BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 RBM22P2-201ENST00000393978 1814 ntBASIC21.25■□□□□ 0.99
VPS8Q8N3P4 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 C12orf66-201ENST00000311915 2698 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 ELP2-221ENST00000542824 2288 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC21.25■□□□□ 0.99
VPS8Q8N3P4 LDLRAD3-202ENST00000524419 1996 ntTSL 5 BASIC21.24■□□□□ 0.99
VPS8Q8N3P4 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VPS8Q8N3P4 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS8Q8N3P4 AL157832.2-205ENST00000597245 1649 ntBASIC21.24■□□□□ 0.99
VPS8Q8N3P4 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
VPS8Q8N3P4 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS8Q8N3P4 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS8Q8N3P4 OLAH-203ENST00000378228 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS8Q8N3P4 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms