Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 KRT8P38-201ENST00000441370 1430 ntBASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 APEX1-201ENST00000216714 1484 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 CTRL-205ENST00000574481 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 SLIRP-201ENST00000238688 394 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 PDZD11-201ENST00000239666 1043 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 MIR181D-201ENST00000384853 137 ntBASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 PPP1R2P10-201ENST00000393023 595 ntBASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 INMT-202ENST00000409539 803 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 BX072579.1-201ENST00000449453 344 ntTSL 3 BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 ADSSL1-208ENST00000555674 520 ntTSL 3 BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 AC068152.1-205ENST00000575173 1081 ntTSL 3 BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 AC008993.3-201ENST00000633603 631 ntTSL 5 BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 EEF1G-201ENST00000329251 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 AL031056.1-202ENST00000635954 2193 ntTSL 5 BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 POLR2J2-203ENST00000476151 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 AP002414.2-201ENST00000591780 3365 ntBASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 MYC-206ENST00000613283 1365 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 GAST-201ENST00000329402 470 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 U3.41-201ENST00000408711 219 ntBASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 AC096536.3-201ENST00000415336 575 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 AC019118.1-201ENST00000454530 435 ntTSL 3 BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC88AQ3V6T2 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 LXN-201ENST00000264265 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 RNA5SP84-201ENST00000364740 107 ntBASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 POLR2F-202ENST00000405557 560 ntTSL 5 BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 SNORD88B-201ENST00000408454 91 ntBASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 CLK2P1-201ENST00000416636 1294 ntBASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 AC026884.1-201ENST00000418296 457 ntBASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 IGFL1-201ENST00000437936 769 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 SNORA47-201ENST00000458862 138 ntBASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 MTHFD2P7-201ENST00000483867 983 ntBASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 CLNK-203ENST00000507719 1143 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 Metazoa_SRP.147-201ENST00000576563 312 ntBASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 PLA2G4C-AS1-203ENST00000601950 454 ntTSL 3 BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 POLR2F-213ENST00000606538 760 ntTSL 2 BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 PILRB-213ENST00000609309 993 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 RDM1-216ENST00000613308 779 ntAPPRIS ALT2 TSL 3 BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 AL137028.2-201ENST00000614601 256 ntBASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 SP140L-205ENST00000458341 1727 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC88AQ3V6T2 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC88AQ3V6T2 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC88AQ3V6T2 MCOLN3-201ENST00000341115 1762 ntTSL 2 BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms