Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC13.48□□□□□ -0.25
FOXA1P55317 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC13.48□□□□□ -0.25
FOXA1P55317 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC13.48□□□□□ -0.25
FOXA1P55317 MIR6805-201ENST00000615055 62 ntBASIC13.48□□□□□ -0.25
FOXA1P55317 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA1P55317 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC13.48□□□□□ -0.25
FOXA1P55317 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC13.48□□□□□ -0.25
FOXA1P55317 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA1P55317 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
FOXA1P55317 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC13.48□□□□□ -0.25
FOXA1P55317 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
FOXA1P55317 BCAP29-201ENST00000005259 4572 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA1P55317 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC13.48□□□□□ -0.25
FOXA1P55317 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA1P55317 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
FOXA1P55317 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA1P55317 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA1P55317 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC13.48□□□□□ -0.25
FOXA1P55317 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA1P55317 AC139795.2-201ENST00000499900 1751 ntTSL 2 BASIC13.48□□□□□ -0.25
FOXA1P55317 VMP1-201ENST00000262291 2712 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA1P55317 LINC00940-201ENST00000418006 2350 ntTSL 2 BASIC13.47□□□□□ -0.25
FOXA1P55317 MAP7D2-202ENST00000379651 3930 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 RPGRIP1-202ENST00000400017 3940 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 SGSM3-201ENST00000248929 2969 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC13.47□□□□□ -0.25
FOXA1P55317 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 ACVR1B-202ENST00000415850 1665 ntTSL 2 BASIC13.47□□□□□ -0.25
FOXA1P55317 SCNN1B-202ENST00000343070 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 DMBT1P1-203ENST00000636837 4628 ntBASIC13.47□□□□□ -0.25
FOXA1P55317 TXNDC17-201ENST00000250101 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC13.47□□□□□ -0.25
FOXA1P55317 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC13.47□□□□□ -0.25
FOXA1P55317 AC007336.3-201ENST00000623886 2160 ntBASIC13.47□□□□□ -0.25
FOXA1P55317 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 PDE2A-218ENST00000540345 3027 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 DHX30-215ENST00000619982 3574 ntAPPRIS ALT1 TSL 5 BASIC13.47□□□□□ -0.25
FOXA1P55317 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 SLC35B3-201ENST00000379660 2137 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 AC006987.1-201ENST00000413610 527 ntBASIC13.47□□□□□ -0.25
FOXA1P55317 BX679664.3-201ENST00000414070 555 ntBASIC13.47□□□□□ -0.25
FOXA1P55317 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC13.47□□□□□ -0.25
FOXA1P55317 AC113935.1-201ENST00000471722 555 ntBASIC13.47□□□□□ -0.25
FOXA1P55317 SLC25A15P3-201ENST00000505530 290 ntBASIC13.47□□□□□ -0.25
FOXA1P55317 AC005740.2-201ENST00000511085 419 ntBASIC13.47□□□□□ -0.25
FOXA1P55317 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC13.47□□□□□ -0.25
FOXA1P55317 IGHV3-71-201ENST00000523324 359 ntBASIC13.47□□□□□ -0.25
FOXA1P55317 CCNC-217ENST00000523985 958 ntTSL 2 BASIC13.47□□□□□ -0.25
FOXA1P55317 TUBB8P7-202ENST00000564451 2115 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC13.47□□□□□ -0.25
FOXA1P55317 AL021707.6-201ENST00000609212 491 ntBASIC13.47□□□□□ -0.25
FOXA1P55317 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC13.47□□□□□ -0.25
FOXA1P55317 SLC25A26-202ENST00000354883 2673 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
FOXA1P55317 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 MMD2-203ENST00000406755 2372 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 NFATC1-204ENST00000397790 3453 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 IL2RG-203ENST00000374202 1534 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 ERCC4-207ENST00000575156 2073 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 GPA33-201ENST00000367868 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC13.47□□□□□ -0.25
FOXA1P55317 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 C7orf57-202ENST00000420324 1957 ntTSL 5 BASIC13.47□□□□□ -0.25
FOXA1P55317 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA1P55317 SMARCA2-254ENST00000636903 2471 ntTSL 5 BASIC13.47□□□□□ -0.25
FOXA1P55317 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC13.47□□□□□ -0.25
FOXA1P55317 XBP1-204ENST00000405219 1690 ntTSL 2 BASIC13.47□□□□□ -0.25
FOXA1P55317 EXOC3-201ENST00000315013 2682 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
FOXA1P55317 KDM2B-215ENST00000542973 3170 ntTSL 2 BASIC13.46□□□□□ -0.25
FOXA1P55317 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA1P55317 SLC37A4-202ENST00000357590 2356 ntTSL 5 BASIC13.46□□□□□ -0.25
FOXA1P55317 AL021155.1-201ENST00000438808 2637 ntBASIC13.46□□□□□ -0.25
FOXA1P55317 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC13.46□□□□□ -0.25
FOXA1P55317 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA1P55317 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA1P55317 DNMT3B-206ENST00000456297 2315 ntTSL 2 BASIC13.46□□□□□ -0.25
FOXA1P55317 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC13.46□□□□□ -0.25
FOXA1P55317 BDH1-203ENST00000392379 3546 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
FOXA1P55317 NRADDP-202ENST00000641269 1585 ntBASIC13.46□□□□□ -0.25
FOXA1P55317 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA1P55317 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA1P55317 AC063926.2-201ENST00000623766 1308 ntBASIC13.46□□□□□ -0.25
FOXA1P55317 AC016245.1-201ENST00000570335 3204 ntTSL 2 BASIC13.46□□□□□ -0.25
FOXA1P55317 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA1P55317 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA1P55317 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
FOXA1P55317 KLKP1-203ENST00000600104 1532 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA1P55317 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.25
FOXA1P55317 FAM213A-204ENST00000372188 829 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
FOXA1P55317 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 168.5 ms