Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AGPAT3-204ENST00000398061 3595 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
SOX2P48431 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC12.34□□□□□ -0.43
SOX2P48431 PHF19-202ENST00000373896 4241 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
SOX2P48431 SLC35F1-201ENST00000360388 4852 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
SOX2P48431 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
SOX2P48431 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC12.34□□□□□ -0.43
SOX2P48431 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
SOX2P48431 EIF3C-201ENST00000331666 3145 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
SOX2P48431 NEU3-204ENST00000531509 2468 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
SOX2P48431 ZNF747-201ENST00000252799 3936 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
SOX2P48431 AC010547.1-201ENST00000500612 2793 ntTSL 2 BASIC12.34□□□□□ -0.43
SOX2P48431 AHCYP2-201ENST00000430630 1300 ntBASIC12.34□□□□□ -0.43
SOX2P48431 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC12.34□□□□□ -0.43
SOX2P48431 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC12.34□□□□□ -0.43
SOX2P48431 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC12.33□□□□□ -0.43
SOX2P48431 NRP1-202ENST00000374816 2804 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
SOX2P48431 FMO6P-201ENST00000236166 1620 ntBASIC12.33□□□□□ -0.43
SOX2P48431 SAP30BP-225ENST00000584667 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SOX2P48431 NRDC-214ENST00000544028 3819 ntTSL 5 BASIC12.33□□□□□ -0.44
SOX2P48431 NOS3-201ENST00000297494 4388 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SOX2P48431 DSN1-201ENST00000373734 1915 ntTSL 2 BASIC12.33□□□□□ -0.44
SOX2P48431 KDM2B-215ENST00000542973 3170 ntTSL 2 BASIC12.33□□□□□ -0.44
SOX2P48431 RAB37-204ENST00000392613 2617 ntAPPRIS ALT1 TSL 2 BASIC12.33□□□□□ -0.44
SOX2P48431 ESYT3-202ENST00000389567 4407 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SOX2P48431 CPEB1-213ENST00000617462 2068 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
SOX2P48431 ARHGAP33-203ENST00000314737 3858 ntAPPRIS P3 TSL 2 BASIC12.33□□□□□ -0.44
SOX2P48431 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
SOX2P48431 RIMS1-201ENST00000264839 7055 ntTSL 5 BASIC12.33□□□□□ -0.44
SOX2P48431 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
SOX2P48431 DYRK4-201ENST00000010132 1840 ntAPPRIS P2 TSL 5 BASIC12.33□□□□□ -0.44
SOX2P48431 HDAC7-202ENST00000354334 4065 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
SOX2P48431 HDAC7-201ENST00000080059 4095 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
SOX2P48431 CTDP1-202ENST00000299543 3380 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
SOX2P48431 ENOX1-201ENST00000261488 2982 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SOX2P48431 AC006001.1-201ENST00000325130 474 ntBASIC12.33□□□□□ -0.44
SOX2P48431 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
SOX2P48431 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC12.33□□□□□ -0.44
SOX2P48431 TMEM14DP-201ENST00000422205 345 ntBASIC12.33□□□□□ -0.44
SOX2P48431 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC12.33□□□□□ -0.44
SOX2P48431 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
SOX2P48431 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC12.33□□□□□ -0.44
SOX2P48431 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
SOX2P48431 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC12.33□□□□□ -0.44
SOX2P48431 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC12.33□□□□□ -0.44
SOX2P48431 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
SOX2P48431 POLE2-203ENST00000553805 496 ntTSL 2 BASIC12.33□□□□□ -0.44
SOX2P48431 SPCS2P1-201ENST00000561636 679 ntBASIC12.33□□□□□ -0.44
SOX2P48431 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
SOX2P48431 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
SOX2P48431 SLC39A11-201ENST00000255559 2737 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
SOX2P48431 AJAP1-202ENST00000378191 11666 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SOX2P48431 PARP3-201ENST00000398755 2336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
SOX2P48431 AL122018.1-201ENST00000446607 2310 ntBASIC12.33□□□□□ -0.44
SOX2P48431 AL845472.1-202ENST00000624675 4080 ntBASIC12.33□□□□□ -0.44
SOX2P48431 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC12.33□□□□□ -0.44
SOX2P48431 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
SOX2P48431 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SOX2P48431 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SOX2P48431 AMT-239ENST00000636865 1914 ntTSL 5 BASIC12.33□□□□□ -0.44
SOX2P48431 DDX50-201ENST00000373585 2538 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SOX2P48431 CT62-203ENST00000566432 2822 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
SOX2P48431 RTN3-210ENST00000540798 3124 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
SOX2P48431 FAM53B-203ENST00000392754 3557 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
SOX2P48431 PPP4R3B-206ENST00000616407 4385 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 RSPO2-202ENST00000517781 2748 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 FGGY-201ENST00000303721 1976 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 MYO1D-202ENST00000394649 5451 ntTSL 5 BASIC12.32□□□□□ -0.44
SOX2P48431 CDC20B-202ENST00000322374 1679 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC12.32□□□□□ -0.44
SOX2P48431 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
SOX2P48431 MAP4K2-201ENST00000294066 7178 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 AC019205.2-203ENST00000421315 3362 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 EEF2K-201ENST00000263026 7388 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
SOX2P48431 CACNA1G-211ENST00000503485 6768 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 RFWD3-201ENST00000361070 4957 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 SARS-201ENST00000234677 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC12.32□□□□□ -0.44
SOX2P48431 PCDHGB1-201ENST00000523390 4590 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 ELN-234ENST00000621115 3452 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
SOX2P48431 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
SOX2P48431 GNL1-201ENST00000376621 7490 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 PIK3R6-204ENST00000619866 3041 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
SOX2P48431 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 AC098614.1-201ENST00000368528 745 ntBASIC12.32□□□□□ -0.44
SOX2P48431 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.44
SOX2P48431 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC12.32□□□□□ -0.44
SOX2P48431 WDR53-203ENST00000429115 683 ntTSL 2 BASIC12.32□□□□□ -0.44
SOX2P48431 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC12.32□□□□□ -0.44
SOX2P48431 TTTY23B-201ENST00000442790 549 ntBASIC12.32□□□□□ -0.44
SOX2P48431 CNN2P10-201ENST00000443067 918 ntBASIC12.32□□□□□ -0.44
SOX2P48431 CRB3P1-201ENST00000449338 276 ntBASIC12.32□□□□□ -0.44
SOX2P48431 HOMER2P2-201ENST00000451621 847 ntBASIC12.32□□□□□ -0.44
SOX2P48431 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 PFN2-215ENST00000497148 743 ntTSL 4 BASIC12.32□□□□□ -0.44
SOX2P48431 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.44
SOX2P48431 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC12.32□□□□□ -0.44
SOX2P48431 AC005962.1-201ENST00000584100 773 ntBASIC12.32□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms