RNA–Protein interactions for RNA: ENST00000523390.1

PCDHGB1-201, Transcript of protocadherin gamma subfamily B, 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHGB1, Length 4,590 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGB1-201ENST00000523390 NISCHQ9Y2I1 1504 aa24.09■■□□□ 1.45
PCDHGB1-201ENST00000523390 DCAF8L2P0C7V8 631 aa23.57■■□□□ 1.36
PCDHGB1-201ENST00000523390 SUPT5HO00267 1087 aaKnown RBP22.42■■□□□ 1.18
PCDHGB1-201ENST00000523390 SHROOM4Q9ULL8 1493 aa22.42■■□□□ 1.18
PCDHGB1-201ENST00000523390 EHMT2Q96KQ7 1210 aa21.4■■□□□ 1.02
PCDHGB1-201ENST00000523390 FAM9AQ8IZU1 332 aaPredicted RBP21.05■□□□□ 0.96
PCDHGB1-201ENST00000523390 TRIM41Q8WV44 630 aa20.75■□□□□ 0.91
PCDHGB1-201ENST00000523390 TTBK1Q5TCY1 1321 aaPredicted RBP20.6■□□□□ 0.89
PCDHGB1-201ENST00000523390 ABCC9O60706 1549 aa20.58■□□□□ 0.89
PCDHGB1-201ENST00000523390 APLP2Q06481 763 aa20.58■□□□□ 0.89
PCDHGB1-201ENST00000523390 PCGF6Q9BYE7 350 aa20.54■□□□□ 0.88
PCDHGB1-201ENST00000523390 RANGAP1P46060 587 aaPredicted RBP20.51■□□□□ 0.87
PCDHGB1-201ENST00000523390 UBTFP17480 764 aaKnown RBP20.34■□□□□ 0.85
PCDHGB1-201ENST00000523390 CHIC1Q5VXU3 224 aa20.31■□□□□ 0.84
PCDHGB1-201ENST00000523390 PABPN1Q86U42 306 aaKnown RBP eCLIP20.25■□□□□ 0.83
PCDHGB1-201ENST00000523390 LOC105371045A0A1W2PR82 267 aa20.15■□□□□ 0.82
PCDHGB1-201ENST00000523390 ATP1B4Q9UN42 357 aaPredicted RBP20.14■□□□□ 0.81
PCDHGB1-201ENST00000523390 PPARGC1BQ86YN6 1023 aaKnown RBP20.12■□□□□ 0.81
PCDHGB1-201ENST00000523390 ZCCHC6Q5VYS8 1495 aaKnown RBP20■□□□□ 0.79
PCDHGB1-201ENST00000523390 CCER1Q8TC90 406 aaPredicted RBP19.98■□□□□ 0.79
PCDHGB1-201ENST00000523390 CCDC180Q9P1Z9 1646 aa19.9■□□□□ 0.78
PCDHGB1-201ENST00000523390 HRCP23327 699 aa19.84■□□□□ 0.77
PCDHGB1-201ENST00000523390 ZEB1P37275 1124 aaPredicted RBP19.81■□□□□ 0.76
PCDHGB1-201ENST00000523390 TRIM26Q12899 539 aaPredicted RBP19.8■□□□□ 0.76
PCDHGB1-201ENST00000523390 SCRIBQ14160 1630 aa19.78■□□□□ 0.76
PCDHGB1-201ENST00000523390 ITGAEP38570 1179 aa19.59■□□□□ 0.73
PCDHGB1-201ENST00000523390 HNRNPUL2Q1KMD3 747 aaKnown RBP19.53■□□□□ 0.72
PCDHGB1-201ENST00000523390 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.5■□□□□ 0.71
PCDHGB1-201ENST00000523390 PELP1Q8IZL8 1130 aaKnown RBP19.33■□□□□ 0.69
PCDHGB1-201ENST00000523390 CENPBP07199 599 aaPredicted RBP19.33■□□□□ 0.68
PCDHGB1-201ENST00000523390 CSRNP3Q8WYN3 585 aa19.3■□□□□ 0.68
PCDHGB1-201ENST00000523390 RB1CC1Q8TDY2 1594 aa19.29■□□□□ 0.68
PCDHGB1-201ENST00000523390 YTHDC1Q96MU7 727 aaKnown RBP19.26■□□□□ 0.67
PCDHGB1-201ENST00000523390 RSF1Q96T23 1441 aaPredicted RBP19.22■□□□□ 0.67
PCDHGB1-201ENST00000523390 NACADO15069 1562 aa19.2■□□□□ 0.66
PCDHGB1-201ENST00000523390 MYT1LQ9UL68 1186 aa19.17■□□□□ 0.66
PCDHGB1-201ENST00000523390 FAM50AQ14320 339 aaKnown RBP19.16■□□□□ 0.66
PCDHGB1-201ENST00000523390 FBLN2P98095 1184 aa19.13■□□□□ 0.65
PCDHGB1-201ENST00000523390 P3H3Q8IVL6 736 aa19.12■□□□□ 0.65
PCDHGB1-201ENST00000523390 MYO15BQ96JP2 1530 aa19.11■□□□□ 0.65
PCDHGB1-201ENST00000523390 DCAF1Q9Y4B6 1507 aa19.09■□□□□ 0.65
PCDHGB1-201ENST00000523390 CECR2Q9BXF3 1484 aa19■□□□□ 0.63
PCDHGB1-201ENST00000523390 POLR3GLQ9BT43 218 aa19■□□□□ 0.63
PCDHGB1-201ENST00000523390 ARID3CA6NKF2 412 aa18.98■□□□□ 0.63
PCDHGB1-201ENST00000523390 TRIM52Q96A61 297 aa18.9■□□□□ 0.62
PCDHGB1-201ENST00000523390 CNGB1Q14028 1251 aaPredicted RBP18.89■□□□□ 0.61
PCDHGB1-201ENST00000523390 NEUROD1Q13562 356 aa18.88■□□□□ 0.61
PCDHGB1-201ENST00000523390 NEFLP07196 543 aa18.85■□□□□ 0.61
PCDHGB1-201ENST00000523390 DIEXFQ68CQ4 756 aaKnown RBP18.84■□□□□ 0.61
PCDHGB1-201ENST00000523390 BAZ1BQ9UIG0 1483 aaKnown RBP18.83■□□□□ 0.61
PCDHGB1-201ENST00000523390 BAZ1AQ9NRL2 1556 aaPredicted RBP18.82■□□□□ 0.6
PCDHGB1-201ENST00000523390 WRNQ14191 1432 aaPredicted RBP eCLIP18.74■□□□□ 0.59
PCDHGB1-201ENST00000523390 MROH2BQ7Z745 1585 aa18.73■□□□□ 0.59
PCDHGB1-201ENST00000523390 ZNF777Q9ULD5 760 aaPredicted RBP18.67■□□□□ 0.58
PCDHGB1-201ENST00000523390 CLIP1P30622 1438 aa18.65■□□□□ 0.58
PCDHGB1-201ENST00000523390 ZNF326Q5BKZ1 582 aaKnown RBP18.64■□□□□ 0.58
PCDHGB1-201ENST00000523390 CDK11AQ9UQ88 783 aaPredicted RBP18.6■□□□□ 0.57
PCDHGB1-201ENST00000523390 EEA1Q15075 1411 aa18.6■□□□□ 0.57
PCDHGB1-201ENST00000523390 CEP162Q5TB80 1403 aa18.58■□□□□ 0.56
PCDHGB1-201ENST00000523390 ZNF316A6NFI3 1004 aaPredicted RBP18.57■□□□□ 0.56
PCDHGB1-201ENST00000523390 GOLGA3Q08378 1498 aa18.56■□□□□ 0.56
PCDHGB1-201ENST00000523390 SCAF1Q9H7N4 1312 aaKnown RBP18.55■□□□□ 0.56
PCDHGB1-201ENST00000523390 ERICH6Q7L0X2 663 aa18.53■□□□□ 0.56
PCDHGB1-201ENST00000523390 SLC4A1APQ9BWU0 796 aaKnown RBP18.53■□□□□ 0.56
PCDHGB1-201ENST00000523390 CCDC88BA6NC98 1476 aa18.52■□□□□ 0.56
PCDHGB1-201ENST00000523390 CHMP7Q8WUX9 453 aaPredicted RBP18.51■□□□□ 0.55
PCDHGB1-201ENST00000523390 GTF3C3Q9Y5Q9 886 aa18.51■□□□□ 0.55
PCDHGB1-201ENST00000523390 KIF27Q86VH2 1401 aa18.49■□□□□ 0.55
PCDHGB1-201ENST00000523390 SOGA1O94964 1423 aa18.47■□□□□ 0.55
PCDHGB1-201ENST00000523390 CHIC2Q9UKJ5 165 aa18.47■□□□□ 0.55
PCDHGB1-201ENST00000523390 WIZO95785 1651 aa18.46■□□□□ 0.55
PCDHGB1-201ENST00000523390 TNIKQ9UKE5 1360 aa18.45■□□□□ 0.54
PCDHGB1-201ENST00000523390 MTUS2Q5JR59 1369 aa18.44■□□□□ 0.54
PCDHGB1-201ENST00000523390 ABCC8Q09428 1581 aa18.43■□□□□ 0.54
PCDHGB1-201ENST00000523390 CEP164Q9UPV0 1460 aa18.43■□□□□ 0.54
PCDHGB1-201ENST00000523390 ACIN1Q9UKV3 1341 aaKnown RBP18.42■□□□□ 0.54
PCDHGB1-201ENST00000523390 ANP32CO43423 234 aa18.38■□□□□ 0.53
PCDHGB1-201ENST00000523390 SMARCA2P51531 1590 aa18.36■□□□□ 0.53
PCDHGB1-201ENST00000523390 TONSLQ96HA7 1378 aa18.32■□□□□ 0.52
PCDHGB1-201ENST00000523390 CUX2O14529 1486 aa18.31■□□□□ 0.52
PCDHGB1-201ENST00000523390 TOP2AP11388 1531 aaKnown RBP18.31■□□□□ 0.52
PCDHGB1-201ENST00000523390 NPM1P06748 294 aaKnown RBP eCLIP18.28■□□□□ 0.52
PCDHGB1-201ENST00000523390 MYT1Q01538 1121 aa18.27■□□□□ 0.51
PCDHGB1-201ENST00000523390 ERCC6Q03468 1493 aa18.26■□□□□ 0.51
PCDHGB1-201ENST00000523390 CARMIL1Q5VZK9 1371 aa18.25■□□□□ 0.51
PCDHGB1-201ENST00000523390 ATAD2BQ9ULI0 1458 aa18.25■□□□□ 0.51
PCDHGB1-201ENST00000523390 RRP7BPQ9NSQ0 103 aa18.25■□□□□ 0.51
PCDHGB1-201ENST00000523390 SMARCA4P51532 1647 aa18.23■□□□□ 0.51
PCDHGB1-201ENST00000523390 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.23■□□□□ 0.51
PCDHGB1-201ENST00000523390 TSPY4P0CV99 314 aa18.22■□□□□ 0.51
PCDHGB1-201ENST00000523390 TSPY10P0CW01 314 aa18.22■□□□□ 0.51
PCDHGB1-201ENST00000523390 BCANQ96GW7 911 aa18.19■□□□□ 0.5
PCDHGB1-201ENST00000523390 DDX10Q13206 875 aaKnown RBP18.19■□□□□ 0.5
PCDHGB1-201ENST00000523390 KCNH8Q96L42 1107 aa18.18■□□□□ 0.5
PCDHGB1-201ENST00000523390 PLEKHD1A6NEE1 506 aa18.16■□□□□ 0.5
PCDHGB1-201ENST00000523390 CHGAP10645 457 aaKnown RBP18.16■□□□□ 0.5
PCDHGB1-201ENST00000523390 TDRD9Q8NDG6 1382 aaKnown RBP18.13■□□□□ 0.49
PCDHGB1-201ENST00000523390 HIRIP3Q9BW71 556 aaPredicted RBP18.13■□□□□ 0.49
PCDHGB1-201ENST00000523390 CADPSQ9ULU8 1353 aa18.12■□□□□ 0.49
PCDHGB1-201ENST00000523390 PDS5BQ9NTI5 1447 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms