Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC14.66□□□□□ -0.06
BDNFP23560 AL132780.4-201ENST00000624870 1135 ntBASIC14.66□□□□□ -0.06
BDNFP23560 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
BDNFP23560 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC14.66□□□□□ -0.06
BDNFP23560 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
BDNFP23560 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
BDNFP23560 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC14.66□□□□□ -0.06
BDNFP23560 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC14.66□□□□□ -0.06
BDNFP23560 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
BDNFP23560 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
BDNFP23560 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
BDNFP23560 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
BDNFP23560 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC14.66□□□□□ -0.06
BDNFP23560 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC14.66□□□□□ -0.06
BDNFP23560 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
BDNFP23560 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
BDNFP23560 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC14.66□□□□□ -0.06
BDNFP23560 PPP1R26P4-201ENST00000619065 3527 ntBASIC14.66□□□□□ -0.06
BDNFP23560 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
BDNFP23560 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
BDNFP23560 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
BDNFP23560 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
BDNFP23560 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
BDNFP23560 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC14.65□□□□□ -0.06
BDNFP23560 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
BDNFP23560 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
BDNFP23560 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC14.65□□□□□ -0.06
BDNFP23560 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
BDNFP23560 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
BDNFP23560 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC14.65□□□□□ -0.06
BDNFP23560 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC14.65□□□□□ -0.06
BDNFP23560 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
BDNFP23560 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
BDNFP23560 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
BDNFP23560 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
BDNFP23560 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
BDNFP23560 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
BDNFP23560 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
BDNFP23560 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
BDNFP23560 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC14.65□□□□□ -0.06
BDNFP23560 OR7E115P-201ENST00000382617 1024 ntBASIC14.65□□□□□ -0.06
BDNFP23560 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
BDNFP23560 AL357563.1-201ENST00000404728 395 ntBASIC14.65□□□□□ -0.06
BDNFP23560 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC14.65□□□□□ -0.06
BDNFP23560 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC14.65□□□□□ -0.06
BDNFP23560 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC14.65□□□□□ -0.06
BDNFP23560 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC14.65□□□□□ -0.06
BDNFP23560 RPL35P9-201ENST00000446059 350 ntBASIC14.65□□□□□ -0.06
BDNFP23560 PIN4P1-201ENST00000451079 396 ntBASIC14.65□□□□□ -0.06
BDNFP23560 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC14.65□□□□□ -0.06
BDNFP23560 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC14.65□□□□□ -0.06
BDNFP23560 NAV2-AS2-201ENST00000533767 782 ntTSL 2 BASIC14.65□□□□□ -0.06
BDNFP23560 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC14.65□□□□□ -0.06
BDNFP23560 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC14.65□□□□□ -0.06
BDNFP23560 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
BDNFP23560 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC14.65□□□□□ -0.06
BDNFP23560 MIR6727-201ENST00000620702 65 ntBASIC14.65□□□□□ -0.06
BDNFP23560 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
BDNFP23560 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC14.65□□□□□ -0.06
BDNFP23560 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
BDNFP23560 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
BDNFP23560 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
BDNFP23560 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC14.65□□□□□ -0.06
BDNFP23560 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
BDNFP23560 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC14.65□□□□□ -0.06
BDNFP23560 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
BDNFP23560 MORN4-201ENST00000307450 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
BDNFP23560 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC14.65□□□□□ -0.06
BDNFP23560 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
BDNFP23560 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC14.65□□□□□ -0.06
BDNFP23560 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
BDNFP23560 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
BDNFP23560 AC020763.3-201ENST00000625095 2904 ntBASIC14.65□□□□□ -0.06
BDNFP23560 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
BDNFP23560 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
BDNFP23560 EDN1-201ENST00000379375 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
BDNFP23560 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
BDNFP23560 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.07
BDNFP23560 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.07
BDNFP23560 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC14.65□□□□□ -0.07
BDNFP23560 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC14.64□□□□□ -0.07
BDNFP23560 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC14.64□□□□□ -0.07
BDNFP23560 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
BDNFP23560 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC14.64□□□□□ -0.07
BDNFP23560 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC14.64□□□□□ -0.07
BDNFP23560 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
BDNFP23560 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC14.64□□□□□ -0.07
BDNFP23560 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC14.64□□□□□ -0.07
BDNFP23560 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
BDNFP23560 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
BDNFP23560 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms