Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 BCRP6-201ENST00000510112 632 ntBASIC15.45■□□□□ 0.06
TPM1P09493 BCRP7-201ENST00000511549 544 ntBASIC15.45■□□□□ 0.06
TPM1P09493 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC15.45■□□□□ 0.06
TPM1P09493 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC15.45■□□□□ 0.06
TPM1P09493 AC078819.1-201ENST00000547454 765 ntBASIC15.45■□□□□ 0.06
TPM1P09493 AC012085.1-201ENST00000548270 765 ntBASIC15.45■□□□□ 0.06
TPM1P09493 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TPM1P09493 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC15.45■□□□□ 0.06
TPM1P09493 AC009884.2-201ENST00000603110 324 ntBASIC15.45■□□□□ 0.06
TPM1P09493 GPR161-209ENST00000539777 7655 ntTSL 2 BASIC15.45■□□□□ 0.06
TPM1P09493 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TPM1P09493 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TPM1P09493 AC115284.2-201ENST00000624646 2054 ntBASIC15.45■□□□□ 0.06
TPM1P09493 SYK-204ENST00000375754 5005 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
TPM1P09493 APBA2-212ENST00000561069 3138 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
TPM1P09493 EPB41L5-205ENST00000452780 6410 ntTSL 5 BASIC15.45■□□□□ 0.06
TPM1P09493 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TPM1P09493 AC002350.2-201ENST00000623894 1828 ntBASIC15.45■□□□□ 0.06
TPM1P09493 HINT3-201ENST00000229633 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TPM1P09493 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
TPM1P09493 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC15.45■□□□□ 0.06
TPM1P09493 AC000120.1-201ENST00000414227 1589 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TPM1P09493 AC244197.3-201ENST00000422081 2635 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
TPM1P09493 GHET1-201ENST00000627071 1906 ntBASIC15.45■□□□□ 0.06
TPM1P09493 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TPM1P09493 MDM1-203ENST00000393543 2718 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TPM1P09493 ERCC6L2-201ENST00000288985 4564 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TPM1P09493 TMEM41A-203ENST00000421852 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TPM1P09493 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC15.44■□□□□ 0.06
TPM1P09493 TCF3-220ENST00000611869 4409 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
TPM1P09493 PDHA1-212ENST00000540249 3277 ntTSL 2 BASIC15.44■□□□□ 0.06
TPM1P09493 CYTH1-215ENST00000591455 3286 ntAPPRIS P3 TSL 2 BASIC15.44■□□□□ 0.06
TPM1P09493 KLF7-204ENST00000423015 1788 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TPM1P09493 E2F3P2-201ENST00000447755 1422 ntBASIC15.44■□□□□ 0.06
TPM1P09493 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC15.44■□□□□ 0.06
TPM1P09493 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TPM1P09493 IST1-203ENST00000378799 4843 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TPM1P09493 LRRN2-201ENST00000367175 5036 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
TPM1P09493 LDLRAD3-202ENST00000524419 1996 ntTSL 5 BASIC15.44■□□□□ 0.06
TPM1P09493 NHEJ1-201ENST00000356853 2094 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TPM1P09493 NOBOX-201ENST00000467773 2076 ntTSL 5 BASIC15.44■□□□□ 0.06
TPM1P09493 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC15.44■□□□□ 0.06
TPM1P09493 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TPM1P09493 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TPM1P09493 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TPM1P09493 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
TPM1P09493 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TPM1P09493 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC15.44■□□□□ 0.06
TPM1P09493 PMS2P2-201ENST00000425039 1128 ntBASIC15.44■□□□□ 0.06
TPM1P09493 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC15.44■□□□□ 0.06
TPM1P09493 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC15.44■□□□□ 0.06
TPM1P09493 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TPM1P09493 CHMP1AP1-201ENST00000445563 662 ntBASIC15.44■□□□□ 0.06
TPM1P09493 SLC25A47P1-201ENST00000531577 414 ntBASIC15.44■□□□□ 0.06
TPM1P09493 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC15.44■□□□□ 0.06
TPM1P09493 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC15.44■□□□□ 0.06
TPM1P09493 AL591163.1-201ENST00000641757 987 ntBASIC15.44■□□□□ 0.06
TPM1P09493 NALCN-AS1-201ENST00000457843 2846 ntTSL 2 BASIC15.44■□□□□ 0.06
TPM1P09493 PIK3CD-202ENST00000377346 5203 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TPM1P09493 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
TPM1P09493 CACNA1G-219ENST00000507609 6849 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
TPM1P09493 EXOC3-201ENST00000315013 2682 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
TPM1P09493 CD22-209ENST00000594250 2107 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TPM1P09493 WNT9A-201ENST00000272164 3971 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TPM1P09493 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TPM1P09493 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC15.44■□□□□ 0.06
TPM1P09493 AOC1-204ENST00000467291 2857 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
TPM1P09493 CAMKK2-204ENST00000392473 2967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
TPM1P09493 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
TPM1P09493 PTPRN2-202ENST00000389416 4692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
TPM1P09493 AHI1-205ENST00000457866 5549 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
TPM1P09493 ZFAND3-201ENST00000287218 3366 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TPM1P09493 CXCR5-201ENST00000292174 4431 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TPM1P09493 FBN1-201ENST00000316623 11756 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TPM1P09493 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
TPM1P09493 CDC20B-203ENST00000381375 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TPM1P09493 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TPM1P09493 RPGRIP1-202ENST00000400017 3940 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
TPM1P09493 NKAP-201ENST00000371410 5963 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TPM1P09493 FRMD6-203ENST00000395718 4828 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TPM1P09493 DNMT1-203ENST00000540357 4916 ntTSL 5 BASIC15.43■□□□□ 0.06
TPM1P09493 ZNF318-201ENST00000361428 8006 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
TPM1P09493 HLCS-207ENST00000612277 6112 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
TPM1P09493 UBN1-202ENST00000396658 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TPM1P09493 CAMTA2-204ENST00000414043 4589 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TPM1P09493 ZFAT-209ENST00000520727 4686 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TPM1P09493 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
TPM1P09493 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
TPM1P09493 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC15.43■□□□□ 0.06
TPM1P09493 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC15.43■□□□□ 0.06
TPM1P09493 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC15.43■□□□□ 0.06
TPM1P09493 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC15.43■□□□□ 0.06
TPM1P09493 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC15.43■□□□□ 0.06
TPM1P09493 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC15.43■□□□□ 0.06
TPM1P09493 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC15.43■□□□□ 0.06
TPM1P09493 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC15.43■□□□□ 0.06
TPM1P09493 RPL8-205ENST00000527914 551 ntTSL 3 BASIC15.43■□□□□ 0.06
TPM1P09493 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TPM1P09493 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC15.43■□□□□ 0.06
TPM1P09493 RN7SL204P-201ENST00000582831 262 ntBASIC15.43■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms