Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 CARHSP1-202ENST00000396593 3026 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CLIP4Q8N3C7 ICOSLG-203ENST00000400379 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CLIP4Q8N3C7 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC13.18□□□□□ -0.3
CLIP4Q8N3C7 SLC46A1-208ENST00000618626 5363 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 TRPM5-203ENST00000533060 3562 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 DNM1-213ENST00000628346 3835 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 PHF13-201ENST00000377648 3681 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 CARS-214ENST00000529772 2637 ntTSL 2 BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 PASK-204ENST00000405260 4942 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 PERM1-202ENST00000433179 3340 ntAPPRIS P2 TSL 5 BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 LINC01019-201ENST00000505443 3199 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 AL645937.6-201ENST00000641122 3727 ntBASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 SLC4A8-205ENST00000535225 2262 ntTSL 2 BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 C10orf90-202ENST00000356858 2995 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 OR2R1P-201ENST00000441404 914 ntBASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 USB1-203ENST00000539737 1212 ntTSL 2 BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 MIR4259-201ENST00000584466 101 ntBASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 AL591471.1-201ENST00000621855 229 ntBASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 AC125807.2-201ENST00000513358 3514 ntBASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 TRPM5-202ENST00000528453 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 C3orf18-206ENST00000449241 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 ACVR1B-202ENST00000415850 1665 ntTSL 2 BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 KRT74-201ENST00000305620 2788 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 PAM-203ENST00000346918 3302 ntTSL 5 BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 POU2F2-202ENST00000389341 6901 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 NEXN-201ENST00000330010 3195 ntTSL 2 BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 ADAMTSL2-203ENST00000393061 4270 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 SLC26A6-205ENST00000395550 2589 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 CACNA1G-229ENST00000514181 6795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 MCRIP1-212ENST00000576730 2979 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 TMEM41A-203ENST00000421852 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLIP4Q8N3C7 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 SECISBP2-202ENST00000375807 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 PTPN1-202ENST00000541713 3469 ntTSL 2 BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 HNRNPUL1-207ENST00000595018 2794 ntTSL 2 BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 ZNF419-202ENST00000347466 3654 ntAPPRIS P3 TSL 2 BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 SENP3-202ENST00000429205 2222 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 TMEM57-201ENST00000374343 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 ARAF-203ENST00000377045 2458 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 PIM2-201ENST00000376509 2075 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 CASC4-201ENST00000299957 3962 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 NDUFAB1P1-201ENST00000404262 460 ntBASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 HSPB1P2-201ENST00000448722 546 ntBASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 RPL18P13-201ENST00000478088 569 ntBASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 RPSAP36-202ENST00000494591 1261 ntBASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 AC140658.4-201ENST00000561990 352 ntBASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 AC008805.1-201ENST00000590892 364 ntBASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 AC009542.2-202ENST00000619004 1067 ntBASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC13.16□□□□□ -0.3
CLIP4Q8N3C7 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms