Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A3P12111 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A3P12111 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC13.81□□□□□ -0.2
COL6A3P12111 AC091965.1-201ENST00000512406 440 ntTSL 3 BASIC13.81□□□□□ -0.2
COL6A3P12111 ILK-216ENST00000627400 111 ntTSL 5 BASIC13.81□□□□□ -0.2
COL6A3P12111 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC13.8□□□□□ -0.2
COL6A3P12111 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC13.8□□□□□ -0.2
COL6A3P12111 ZNF124-201ENST00000340684 1674 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A3P12111 HLA-DOB-206ENST00000438763 1372 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
COL6A3P12111 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC13.8□□□□□ -0.2
COL6A3P12111 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC13.8□□□□□ -0.2
COL6A3P12111 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A3P12111 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A3P12111 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A3P12111 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
COL6A3P12111 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A3P12111 GYG2P1-203ENST00000382965 149 ntBASIC13.8□□□□□ -0.2
COL6A3P12111 PPIL3-205ENST00000409449 756 ntTSL 5 BASIC13.8□□□□□ -0.2
COL6A3P12111 MT1XP1-201ENST00000421314 186 ntBASIC13.8□□□□□ -0.2
COL6A3P12111 MIR2110-201ENST00000459421 75 ntBASIC13.8□□□□□ -0.2
COL6A3P12111 DEGS2-202ENST00000553834 421 ntTSL 3 BASIC13.8□□□□□ -0.2
COL6A3P12111 SNAPC5-205ENST00000563480 920 ntAPPRIS P2 TSL 2 BASIC13.8□□□□□ -0.2
COL6A3P12111 ELOB-205ENST00000572954 331 ntTSL 2 BASIC13.8□□□□□ -0.2
COL6A3P12111 SKAP1-AS1-201ENST00000582246 687 ntTSL 2 BASIC13.8□□□□□ -0.2
COL6A3P12111 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A3P12111 HNRNPL-210ENST00000600873 1633 ntTSL 5 BASIC13.8□□□□□ -0.2
COL6A3P12111 TOP3B-202ENST00000398793 3107 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A3P12111 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A3P12111 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A3P12111 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC13.8□□□□□ -0.2
COL6A3P12111 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A3P12111 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A3P12111 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
COL6A3P12111 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A3P12111 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A3P12111 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC13.8□□□□□ -0.2
COL6A3P12111 AIRN-202ENST00000609176 1489 ntTSL 5 BASIC13.8□□□□□ -0.2
COL6A3P12111 GAPDHP29-201ENST00000429913 985 ntBASIC13.8□□□□□ -0.2
COL6A3P12111 MTND6P14-201ENST00000433044 522 ntBASIC13.8□□□□□ -0.2
COL6A3P12111 AK2-208ENST00000487289 920 ntTSL 2 BASIC13.8□□□□□ -0.2
COL6A3P12111 DYNLL1P2-201ENST00000554807 270 ntBASIC13.8□□□□□ -0.2
COL6A3P12111 TRAV33-201ENST00000557514 338 ntBASIC13.8□□□□□ -0.2
COL6A3P12111 AC023983.1-201ENST00000579347 567 ntTSL 5 BASIC13.8□□□□□ -0.2
COL6A3P12111 AC006557.1-201ENST00000591211 1085 ntBASIC13.8□□□□□ -0.2
COL6A3P12111 LINC00643-207ENST00000637212 734 ntBASIC13.8□□□□□ -0.2
COL6A3P12111 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC13.8□□□□□ -0.2
COL6A3P12111 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC13.8□□□□□ -0.2
COL6A3P12111 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC13.8□□□□□ -0.2
COL6A3P12111 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
COL6A3P12111 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A3P12111 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A3P12111 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A3P12111 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A3P12111 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A3P12111 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A3P12111 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A3P12111 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A3P12111 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC13.79□□□□□ -0.2
COL6A3P12111 RABL2B-203ENST00000395591 1987 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A3P12111 GAGE12H-201ENST00000381722 527 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A3P12111 LINC01044-201ENST00000413637 657 ntTSL 3 BASIC13.79□□□□□ -0.2
COL6A3P12111 TEDDM2P-201ENST00000414169 786 ntBASIC13.79□□□□□ -0.2
COL6A3P12111 AC046143.1-201ENST00000447139 972 ntTSL 2 BASIC13.79□□□□□ -0.2
COL6A3P12111 SOX2-OT-201ENST00000460739 609 ntTSL 4 BASIC13.79□□□□□ -0.2
COL6A3P12111 AC091544.2-201ENST00000555864 414 ntTSL 3 BASIC13.79□□□□□ -0.2
COL6A3P12111 AC104041.1-202ENST00000560097 566 ntTSL 4 BASIC13.79□□□□□ -0.2
COL6A3P12111 AC090617.4-201ENST00000572404 422 ntTSL 3 BASIC13.79□□□□□ -0.2
COL6A3P12111 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A3P12111 GSN-215ENST00000545652 2428 ntTSL 2 BASIC13.79□□□□□ -0.2
COL6A3P12111 ZIK1-201ENST00000307468 2510 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A3P12111 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A3P12111 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A3P12111 DDC-212ENST00000615193 1674 ntTSL 3 BASIC13.79□□□□□ -0.2
COL6A3P12111 AC040160.2-201ENST00000623816 1675 ntBASIC13.79□□□□□ -0.2
COL6A3P12111 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC13.79□□□□□ -0.2
COL6A3P12111 DAP3-203ENST00000421487 1470 ntTSL 2 BASIC13.79□□□□□ -0.2
COL6A3P12111 AL118505.1-201ENST00000619370 1932 ntBASIC13.79□□□□□ -0.2
COL6A3P12111 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A3P12111 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A3P12111 C20orf141-201ENST00000380589 730 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A3P12111 NPIPB2-202ENST00000399147 1194 ntAPPRIS P5 TSL 5 BASIC13.79□□□□□ -0.2
COL6A3P12111 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A3P12111 FAM45BP-201ENST00000408950 1074 ntBASIC13.79□□□□□ -0.2
COL6A3P12111 AKIRIN1P2-201ENST00000440655 570 ntBASIC13.79□□□□□ -0.2
COL6A3P12111 SNHG14-207ENST00000452731 1064 ntTSL 5 BASIC13.79□□□□□ -0.2
COL6A3P12111 AC006111.1-201ENST00000573982 329 ntTSL 3 BASIC13.79□□□□□ -0.2
COL6A3P12111 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A3P12111 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A3P12111 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
COL6A3P12111 EIF3LP1-201ENST00000554099 1658 ntBASIC13.79□□□□□ -0.2
COL6A3P12111 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A3P12111 GSN-203ENST00000373808 2664 ntTSL 2 BASIC13.79□□□□□ -0.2
COL6A3P12111 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A3P12111 RHPN1-AS1-201ENST00000518049 1918 ntBASIC13.79□□□□□ -0.2
COL6A3P12111 LIMS1-204ENST00000409441 1627 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A3P12111 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
COL6A3P12111 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A3P12111 AC061965.1-201ENST00000560524 1465 ntBASIC13.79□□□□□ -0.2
COL6A3P12111 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC13.79□□□□□ -0.2
COL6A3P12111 PDE9A-211ENST00000398232 1885 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms