Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 CCDC103-204ENST00000417826 3397 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TPM1P09493 USP20-202ENST00000358355 4371 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TPM1P09493 HDLBP-214ENST00000427183 6238 ntTSL 2 BASIC15.47■□□□□ 0.07
TPM1P09493 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC15.47■□□□□ 0.07
TPM1P09493 SERPINB1-201ENST00000380739 2619 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TPM1P09493 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 PLAT-201ENST00000220809 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 SHMT1P1-201ENST00000419974 1312 ntBASIC15.46■□□□□ 0.07
TPM1P09493 COPS7B-203ENST00000373608 2563 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 DSN1-204ENST00000426836 2441 ntAPPRIS P3 TSL 2 BASIC15.46■□□□□ 0.07
TPM1P09493 VPS13A-204ENST00000376634 10269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC15.46■□□□□ 0.07
TPM1P09493 FAM212B-AS1-201ENST00000430373 2131 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 PCDHA4-202ENST00000512229 4163 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 PLD1-201ENST00000331659 2906 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 CDCA3-202ENST00000422785 2760 ntTSL 2 BASIC15.46■□□□□ 0.07
TPM1P09493 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 AL133387.2-201ENST00000422661 2222 ntTSL 2 BASIC15.46■□□□□ 0.07
TPM1P09493 GNPDA1-204ENST00000503794 2622 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 MAT2B-204ENST00000518095 3409 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 ZBTB42-201ENST00000342537 3800 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
TPM1P09493 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 SNORA50C-201ENST00000408535 133 ntBASIC15.46■□□□□ 0.07
TPM1P09493 AC007389.4-201ENST00000454674 793 ntBASIC15.46■□□□□ 0.07
TPM1P09493 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC15.46■□□□□ 0.07
TPM1P09493 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC15.46■□□□□ 0.07
TPM1P09493 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
TPM1P09493 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC15.46■□□□□ 0.07
TPM1P09493 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC15.46■□□□□ 0.07
TPM1P09493 AC090617.6-201ENST00000572790 443 ntTSL 3 BASIC15.46■□□□□ 0.07
TPM1P09493 AC015936.2-201ENST00000593177 259 ntBASIC15.46■□□□□ 0.07
TPM1P09493 LAMTOR5-AS1-209ENST00000597455 805 ntBASIC15.46■□□□□ 0.07
TPM1P09493 SNORA50.1-201ENST00000628590 135 ntBASIC15.46■□□□□ 0.07
TPM1P09493 SIRT2-201ENST00000249396 2070 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 SIRT2-204ENST00000392081 2062 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC15.46■□□□□ 0.07
TPM1P09493 LILRA1-201ENST00000251372 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 NUP62CL-201ENST00000372466 1755 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 RPA2-203ENST00000373912 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 GPA33-201ENST00000367868 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 SPATA12-201ENST00000334325 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TPM1P09493 OR2V2-202ENST00000641492 4777 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
TPM1P09493 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC15.46■□□□□ 0.07
TPM1P09493 POM121L9P-201ENST00000414583 5018 ntTSL 2 BASIC15.46■□□□□ 0.07
TPM1P09493 PAX8-203ENST00000348715 3966 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
TPM1P09493 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
TPM1P09493 TBC1D2-204ENST00000375066 3198 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
TPM1P09493 MAP2K4P1-202ENST00000602584 2539 ntTSL 2 BASIC15.46■□□□□ 0.06
TPM1P09493 PLEKHM1P1-202ENST00000578036 4318 ntTSL 2 BASIC15.46■□□□□ 0.06
TPM1P09493 HNRNPUL1-207ENST00000595018 2794 ntTSL 2 BASIC15.46■□□□□ 0.06
TPM1P09493 PCDHGB1-201ENST00000523390 4590 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
TPM1P09493 MYO9B-201ENST00000397274 7532 ntTSL 5 BASIC15.46■□□□□ 0.06
TPM1P09493 QSOX1-202ENST00000367602 9311 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
TPM1P09493 HRC-201ENST00000252825 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
TPM1P09493 SPTB-202ENST00000389720 6321 ntTSL 5 BASIC15.46■□□□□ 0.06
TPM1P09493 TRGV9-201ENST00000444775 1735 ntAPPRIS P1 BASIC15.46■□□□□ 0.06
TPM1P09493 USP40-201ENST00000251722 5692 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.06
TPM1P09493 TRPM4-201ENST00000252826 4109 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TPM1P09493 EFHC2-202ENST00000420999 2464 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TPM1P09493 MTHFSD-204ENST00000546093 2451 ntTSL 2 BASIC15.45■□□□□ 0.06
TPM1P09493 SLC35F1-201ENST00000360388 4852 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
TPM1P09493 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC15.45■□□□□ 0.06
TPM1P09493 DRD3-203ENST00000460779 1557 ntAPPRIS P3 TSL 2 BASIC15.45■□□□□ 0.06
TPM1P09493 AC008620.2-201ENST00000510294 1569 ntBASIC15.45■□□□□ 0.06
TPM1P09493 DYRK4-201ENST00000010132 1840 ntAPPRIS P2 TSL 5 BASIC15.45■□□□□ 0.06
TPM1P09493 SPTB-203ENST00000389721 6705 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TPM1P09493 MTMR11-201ENST00000369140 2324 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
TPM1P09493 AP001972.5-201ENST00000624624 2338 ntBASIC15.45■□□□□ 0.06
TPM1P09493 MYRIP-204ENST00000444716 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TPM1P09493 PTPN6-202ENST00000399448 2159 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
TPM1P09493 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TPM1P09493 RNF43-202ENST00000577625 2198 ntTSL 2 BASIC15.45■□□□□ 0.06
TPM1P09493 AC060814.4-201ENST00000594169 2163 ntBASIC15.45■□□□□ 0.06
TPM1P09493 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TPM1P09493 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
TPM1P09493 LMCD1-201ENST00000157600 8405 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TPM1P09493 NUTM2E-202ENST00000602967 3623 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
TPM1P09493 ADCY4-202ENST00000418030 3353 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TPM1P09493 SDR9C7-201ENST00000293502 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TPM1P09493 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC15.45■□□□□ 0.06
TPM1P09493 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TPM1P09493 MIR770-201ENST00000390219 98 ntBASIC15.45■□□□□ 0.06
TPM1P09493 AC092933.1-201ENST00000393644 945 ntBASIC15.45■□□□□ 0.06
TPM1P09493 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC15.45■□□□□ 0.06
TPM1P09493 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC15.45■□□□□ 0.06
TPM1P09493 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC15.45■□□□□ 0.06
TPM1P09493 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC15.45■□□□□ 0.06
TPM1P09493 BCRP2-202ENST00000447763 634 ntBASIC15.45■□□□□ 0.06
TPM1P09493 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms