Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC23.44■■□□□ 1.34
PCDHA3Q9Y5H8 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC23.44■■□□□ 1.34
PCDHA3Q9Y5H8 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC23.44■■□□□ 1.34
PCDHA3Q9Y5H8 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC23.44■■□□□ 1.34
PCDHA3Q9Y5H8 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
PCDHA3Q9Y5H8 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
PCDHA3Q9Y5H8 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
PCDHA3Q9Y5H8 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC23.44■■□□□ 1.34
PCDHA3Q9Y5H8 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
PCDHA3Q9Y5H8 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
PCDHA3Q9Y5H8 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC23.43■■□□□ 1.34
PCDHA3Q9Y5H8 REST-206ENST00000612429 1376 ntTSL 5 BASIC23.43■■□□□ 1.34
PCDHA3Q9Y5H8 REST-207ENST00000616975 1370 ntTSL 5 BASIC23.43■■□□□ 1.34
PCDHA3Q9Y5H8 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
PCDHA3Q9Y5H8 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC23.43■■□□□ 1.34
PCDHA3Q9Y5H8 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
PCDHA3Q9Y5H8 LSR-203ENST00000360798 1963 ntTSL 2 BASIC23.43■■□□□ 1.34
PCDHA3Q9Y5H8 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
PCDHA3Q9Y5H8 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
PCDHA3Q9Y5H8 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
PCDHA3Q9Y5H8 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
PCDHA3Q9Y5H8 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC23.42■■□□□ 1.34
PCDHA3Q9Y5H8 TK2-202ENST00000417693 1046 ntTSL 2 BASIC23.42■■□□□ 1.34
PCDHA3Q9Y5H8 AC137630.3-201ENST00000607245 391 ntBASIC23.42■■□□□ 1.34
PCDHA3Q9Y5H8 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC23.42■■□□□ 1.34
PCDHA3Q9Y5H8 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC23.42■■□□□ 1.34
PCDHA3Q9Y5H8 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC23.42■■□□□ 1.34
PCDHA3Q9Y5H8 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC23.42■■□□□ 1.34
PCDHA3Q9Y5H8 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC23.42■■□□□ 1.34
PCDHA3Q9Y5H8 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
PCDHA3Q9Y5H8 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
PCDHA3Q9Y5H8 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
PCDHA3Q9Y5H8 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
PCDHA3Q9Y5H8 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC23.41■■□□□ 1.34
PCDHA3Q9Y5H8 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
PCDHA3Q9Y5H8 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC23.41■■□□□ 1.34
PCDHA3Q9Y5H8 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
PCDHA3Q9Y5H8 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
PCDHA3Q9Y5H8 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC23.41■■□□□ 1.34
PCDHA3Q9Y5H8 KRT8P33-201ENST00000508125 1423 ntBASIC23.41■■□□□ 1.34
PCDHA3Q9Y5H8 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC23.41■■□□□ 1.34
PCDHA3Q9Y5H8 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
PCDHA3Q9Y5H8 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC23.41■■□□□ 1.34
PCDHA3Q9Y5H8 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
PCDHA3Q9Y5H8 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
PCDHA3Q9Y5H8 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC23.4■■□□□ 1.34
PCDHA3Q9Y5H8 YBX1P4-201ENST00000392794 808 ntBASIC23.4■■□□□ 1.34
PCDHA3Q9Y5H8 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC23.4■■□□□ 1.34
PCDHA3Q9Y5H8 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
PCDHA3Q9Y5H8 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC23.4■■□□□ 1.34
PCDHA3Q9Y5H8 TK2-216ENST00000564917 1156 ntTSL 3 BASIC23.4■■□□□ 1.34
PCDHA3Q9Y5H8 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC23.4■■□□□ 1.34
PCDHA3Q9Y5H8 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
PCDHA3Q9Y5H8 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
PCDHA3Q9Y5H8 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC23.4■■□□□ 1.34
PCDHA3Q9Y5H8 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC23.4■■□□□ 1.34
PCDHA3Q9Y5H8 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
PCDHA3Q9Y5H8 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC23.39■■□□□ 1.34
PCDHA3Q9Y5H8 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.34
PCDHA3Q9Y5H8 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC23.39■■□□□ 1.34
PCDHA3Q9Y5H8 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
PCDHA3Q9Y5H8 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC23.39■■□□□ 1.33
PCDHA3Q9Y5H8 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
PCDHA3Q9Y5H8 SENP5-202ENST00000419026 973 ntTSL 3 BASIC23.39■■□□□ 1.33
PCDHA3Q9Y5H8 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC23.39■■□□□ 1.33
PCDHA3Q9Y5H8 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
PCDHA3Q9Y5H8 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC23.39■■□□□ 1.33
PCDHA3Q9Y5H8 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
PCDHA3Q9Y5H8 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
PCDHA3Q9Y5H8 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC23.39■■□□□ 1.33
PCDHA3Q9Y5H8 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
PCDHA3Q9Y5H8 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
PCDHA3Q9Y5H8 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
PCDHA3Q9Y5H8 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
PCDHA3Q9Y5H8 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
PCDHA3Q9Y5H8 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
PCDHA3Q9Y5H8 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
PCDHA3Q9Y5H8 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
PCDHA3Q9Y5H8 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC23.38■■□□□ 1.33
PCDHA3Q9Y5H8 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC23.38■■□□□ 1.33
PCDHA3Q9Y5H8 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.33
PCDHA3Q9Y5H8 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
PCDHA3Q9Y5H8 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC23.37■■□□□ 1.33
PCDHA3Q9Y5H8 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
PCDHA3Q9Y5H8 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
PCDHA3Q9Y5H8 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
PCDHA3Q9Y5H8 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC23.37■■□□□ 1.33
PCDHA3Q9Y5H8 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
PCDHA3Q9Y5H8 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
PCDHA3Q9Y5H8 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
PCDHA3Q9Y5H8 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC23.37■■□□□ 1.33
PCDHA3Q9Y5H8 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC23.37■■□□□ 1.33
PCDHA3Q9Y5H8 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
PCDHA3Q9Y5H8 AC144652.1-201ENST00000609974 1624 ntBASIC23.37■■□□□ 1.33
PCDHA3Q9Y5H8 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC23.36■■□□□ 1.33
PCDHA3Q9Y5H8 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
PCDHA3Q9Y5H8 AC242852.2-201ENST00000615738 1807 ntBASIC23.36■■□□□ 1.33
PCDHA3Q9Y5H8 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
PCDHA3Q9Y5H8 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC23.36■■□□□ 1.33
PCDHA3Q9Y5H8 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms