Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 CLTA-210ENST00000540080 989 ntTSL 2 BASIC19.97■□□□□ 0.79
VSX1Q9NZR4 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VSX1Q9NZR4 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VSX1Q9NZR4 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VSX1Q9NZR4 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VSX1Q9NZR4 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
VSX1Q9NZR4 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VSX1Q9NZR4 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VSX1Q9NZR4 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
VSX1Q9NZR4 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VSX1Q9NZR4 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VSX1Q9NZR4 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VSX1Q9NZR4 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC19.96■□□□□ 0.79
VSX1Q9NZR4 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VSX1Q9NZR4 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VSX1Q9NZR4 C1orf229-201ENST00000623686 2258 ntBASIC19.96■□□□□ 0.79
VSX1Q9NZR4 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VSX1Q9NZR4 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VSX1Q9NZR4 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC19.95■□□□□ 0.78
VSX1Q9NZR4 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
VSX1Q9NZR4 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
VSX1Q9NZR4 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC19.95■□□□□ 0.78
VSX1Q9NZR4 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
VSX1Q9NZR4 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
VSX1Q9NZR4 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
VSX1Q9NZR4 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
VSX1Q9NZR4 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VSX1Q9NZR4 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
VSX1Q9NZR4 AL353803.4-201ENST00000565882 1934 ntBASIC19.94■□□□□ 0.78
VSX1Q9NZR4 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
VSX1Q9NZR4 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
VSX1Q9NZR4 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
VSX1Q9NZR4 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.94■□□□□ 0.78
VSX1Q9NZR4 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VSX1Q9NZR4 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC19.94■□□□□ 0.78
VSX1Q9NZR4 AC005703.6-201ENST00000623265 1329 ntBASIC19.94■□□□□ 0.78
VSX1Q9NZR4 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.94■□□□□ 0.78
VSX1Q9NZR4 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC19.93■□□□□ 0.78
VSX1Q9NZR4 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC19.93■□□□□ 0.78
VSX1Q9NZR4 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VSX1Q9NZR4 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
VSX1Q9NZR4 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.93■□□□□ 0.78
VSX1Q9NZR4 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
VSX1Q9NZR4 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC19.93■□□□□ 0.78
VSX1Q9NZR4 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
VSX1Q9NZR4 AC079834.2-201ENST00000609776 1949 ntBASIC19.93■□□□□ 0.78
VSX1Q9NZR4 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
VSX1Q9NZR4 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
VSX1Q9NZR4 AC233723.2-201ENST00000623798 2106 ntBASIC19.93■□□□□ 0.78
VSX1Q9NZR4 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC19.92■□□□□ 0.78
VSX1Q9NZR4 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
VSX1Q9NZR4 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC19.92■□□□□ 0.78
VSX1Q9NZR4 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VSX1Q9NZR4 AC144652.1-201ENST00000609974 1624 ntBASIC19.92■□□□□ 0.78
VSX1Q9NZR4 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC19.92■□□□□ 0.78
VSX1Q9NZR4 RNF146-205ENST00000477776 762 ntTSL 3 BASIC19.92■□□□□ 0.78
VSX1Q9NZR4 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VSX1Q9NZR4 Z92544.1-202ENST00000571933 1220 ntBASIC19.92■□□□□ 0.78
VSX1Q9NZR4 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VSX1Q9NZR4 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VSX1Q9NZR4 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VSX1Q9NZR4 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VSX1Q9NZR4 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VSX1Q9NZR4 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
VSX1Q9NZR4 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VSX1Q9NZR4 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VSX1Q9NZR4 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VSX1Q9NZR4 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC19.91■□□□□ 0.78
VSX1Q9NZR4 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
VSX1Q9NZR4 AL117328.2-201ENST00000624617 1940 ntBASIC19.91■□□□□ 0.78
VSX1Q9NZR4 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VSX1Q9NZR4 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.91■□□□□ 0.78
VSX1Q9NZR4 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
VSX1Q9NZR4 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
VSX1Q9NZR4 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VSX1Q9NZR4 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
VSX1Q9NZR4 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
VSX1Q9NZR4 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VSX1Q9NZR4 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VSX1Q9NZR4 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
VSX1Q9NZR4 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC19.9■□□□□ 0.78
VSX1Q9NZR4 CLTA-206ENST00000466396 695 ntTSL 2 BASIC19.9■□□□□ 0.78
VSX1Q9NZR4 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC19.9■□□□□ 0.78
VSX1Q9NZR4 AC092028.1-203ENST00000608262 953 ntBASIC19.9■□□□□ 0.78
VSX1Q9NZR4 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC19.9■□□□□ 0.78
VSX1Q9NZR4 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC19.9■□□□□ 0.78
VSX1Q9NZR4 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
VSX1Q9NZR4 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
VSX1Q9NZR4 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC19.9■□□□□ 0.78
VSX1Q9NZR4 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VSX1Q9NZR4 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VSX1Q9NZR4 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC19.89■□□□□ 0.78
VSX1Q9NZR4 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
VSX1Q9NZR4 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VSX1Q9NZR4 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
VSX1Q9NZR4 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VSX1Q9NZR4 KRT125P-201ENST00000546827 989 ntBASIC19.89■□□□□ 0.77
VSX1Q9NZR4 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC19.89■□□□□ 0.77
VSX1Q9NZR4 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VSX1Q9NZR4 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms