Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC23.96■■□□□ 1.43
CISHQ9NSE2 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
CISHQ9NSE2 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC23.96■■□□□ 1.43
CISHQ9NSE2 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC23.96■■□□□ 1.43
CISHQ9NSE2 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC23.95■■□□□ 1.43
CISHQ9NSE2 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CISHQ9NSE2 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
CISHQ9NSE2 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
CISHQ9NSE2 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CISHQ9NSE2 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CISHQ9NSE2 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC23.94■■□□□ 1.42
CISHQ9NSE2 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
CISHQ9NSE2 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC23.94■■□□□ 1.42
CISHQ9NSE2 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC23.94■■□□□ 1.42
CISHQ9NSE2 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC23.94■■□□□ 1.42
CISHQ9NSE2 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC23.94■■□□□ 1.42
CISHQ9NSE2 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC23.94■■□□□ 1.42
CISHQ9NSE2 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CISHQ9NSE2 AL353803.4-201ENST00000565882 1934 ntBASIC23.94■■□□□ 1.42
CISHQ9NSE2 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC23.94■■□□□ 1.42
CISHQ9NSE2 GATM-206ENST00000558336 1522 ntTSL 2 BASIC23.94■■□□□ 1.42
CISHQ9NSE2 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC23.93■■□□□ 1.42
CISHQ9NSE2 DUSP8P3-201ENST00000399571 1760 ntBASIC23.93■■□□□ 1.42
CISHQ9NSE2 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC23.93■■□□□ 1.42
CISHQ9NSE2 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
CISHQ9NSE2 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC23.93■■□□□ 1.42
CISHQ9NSE2 FP325331.1-202ENST00000623531 1380 ntBASIC23.93■■□□□ 1.42
CISHQ9NSE2 VGF-203ENST00000611537 1622 ntTSL 5 BASIC23.93■■□□□ 1.42
CISHQ9NSE2 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC23.93■■□□□ 1.42
CISHQ9NSE2 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CISHQ9NSE2 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
CISHQ9NSE2 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC23.92■■□□□ 1.42
CISHQ9NSE2 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC23.92■■□□□ 1.42
CISHQ9NSE2 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CISHQ9NSE2 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC23.92■■□□□ 1.42
CISHQ9NSE2 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC23.92■■□□□ 1.42
CISHQ9NSE2 RARA-203ENST00000394086 2008 ntTSL 2 BASIC23.92■■□□□ 1.42
CISHQ9NSE2 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
CISHQ9NSE2 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CISHQ9NSE2 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CISHQ9NSE2 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CISHQ9NSE2 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC23.91■■□□□ 1.42
CISHQ9NSE2 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC23.91■■□□□ 1.42
CISHQ9NSE2 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CISHQ9NSE2 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CISHQ9NSE2 LINC01529-204ENST00000636474 1715 ntBASIC23.91■■□□□ 1.42
CISHQ9NSE2 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC23.91■■□□□ 1.42
CISHQ9NSE2 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CISHQ9NSE2 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
CISHQ9NSE2 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CISHQ9NSE2 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
CISHQ9NSE2 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CISHQ9NSE2 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CISHQ9NSE2 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CISHQ9NSE2 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
CISHQ9NSE2 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CISHQ9NSE2 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
CISHQ9NSE2 SRD5A1P1-201ENST00000442297 786 ntBASIC23.9■■□□□ 1.42
CISHQ9NSE2 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC23.9■■□□□ 1.42
CISHQ9NSE2 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC23.9■■□□□ 1.42
CISHQ9NSE2 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
CISHQ9NSE2 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CISHQ9NSE2 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
CISHQ9NSE2 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC23.89■■□□□ 1.42
CISHQ9NSE2 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
CISHQ9NSE2 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.41
CISHQ9NSE2 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
CISHQ9NSE2 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
CISHQ9NSE2 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC23.89■■□□□ 1.41
CISHQ9NSE2 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC23.89■■□□□ 1.41
CISHQ9NSE2 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC23.89■■□□□ 1.41
CISHQ9NSE2 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.41
CISHQ9NSE2 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.41
CISHQ9NSE2 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CISHQ9NSE2 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CISHQ9NSE2 DUX4L4-201ENST00000566884 1269 ntBASIC23.88■■□□□ 1.41
CISHQ9NSE2 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
CISHQ9NSE2 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC23.88■■□□□ 1.41
CISHQ9NSE2 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC23.88■■□□□ 1.41
CISHQ9NSE2 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
CISHQ9NSE2 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC23.87■■□□□ 1.41
CISHQ9NSE2 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC23.87■■□□□ 1.41
CISHQ9NSE2 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CISHQ9NSE2 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC23.87■■□□□ 1.41
CISHQ9NSE2 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC23.87■■□□□ 1.41
CISHQ9NSE2 AC241377.3-202ENST00000626088 1088 ntBASIC23.87■■□□□ 1.41
CISHQ9NSE2 AC241585.3-202ENST00000628937 1088 ntBASIC23.87■■□□□ 1.41
CISHQ9NSE2 AC245100.8-202ENST00000629247 1058 ntBASIC23.87■■□□□ 1.41
CISHQ9NSE2 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CISHQ9NSE2 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CISHQ9NSE2 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CISHQ9NSE2 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CISHQ9NSE2 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CISHQ9NSE2 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC23.86■■□□□ 1.41
CISHQ9NSE2 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC23.86■■□□□ 1.41
CISHQ9NSE2 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
CISHQ9NSE2 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CISHQ9NSE2 AL136116.3-201ENST00000402907 1138 ntBASIC23.86■■□□□ 1.41
CISHQ9NSE2 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CISHQ9NSE2 AC099791.2-201ENST00000605725 427 ntBASIC23.86■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms