Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 DUX4L4-201ENST00000566884 1269 ntBASIC28.15■■■□□ 2.1
USP44Q9H0E7 AC009086.3-201ENST00000623486 1008 ntBASIC28.15■■■□□ 2.1
USP44Q9H0E7 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
USP44Q9H0E7 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC28.15■■■□□ 2.1
USP44Q9H0E7 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
USP44Q9H0E7 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC28.14■■■□□ 2.1
USP44Q9H0E7 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC28.14■■■□□ 2.1
USP44Q9H0E7 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC28.14■■■□□ 2.1
USP44Q9H0E7 MIR3181-201ENST00000578512 73 ntBASIC28.14■■■□□ 2.1
USP44Q9H0E7 AC092171.4-201ENST00000609130 632 ntBASIC28.14■■■□□ 2.1
USP44Q9H0E7 SF1-220ENST00000626028 704 ntTSL 2 BASIC28.14■■■□□ 2.1
USP44Q9H0E7 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC28.14■■■□□ 2.1
USP44Q9H0E7 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC28.14■■■□□ 2.1
USP44Q9H0E7 SYT6-210ENST00000641643 1587 ntBASIC28.14■■■□□ 2.1
USP44Q9H0E7 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC28.14■■■□□ 2.09
USP44Q9H0E7 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
USP44Q9H0E7 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
USP44Q9H0E7 LINC01529-204ENST00000636474 1715 ntBASIC28.13■■■□□ 2.09
USP44Q9H0E7 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC28.13■■■□□ 2.09
USP44Q9H0E7 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.09
USP44Q9H0E7 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC28.13■■■□□ 2.09
USP44Q9H0E7 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC28.13■■■□□ 2.09
USP44Q9H0E7 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
USP44Q9H0E7 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC28.13■■■□□ 2.09
USP44Q9H0E7 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
USP44Q9H0E7 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC28.13■■■□□ 2.09
USP44Q9H0E7 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC28.12■■■□□ 2.09
USP44Q9H0E7 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
USP44Q9H0E7 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
USP44Q9H0E7 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC28.12■■■□□ 2.09
USP44Q9H0E7 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC28.12■■■□□ 2.09
USP44Q9H0E7 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
USP44Q9H0E7 PTCHD3P2-201ENST00000424937 1205 ntBASIC28.12■■■□□ 2.09
USP44Q9H0E7 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC28.12■■■□□ 2.09
USP44Q9H0E7 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
USP44Q9H0E7 AC024257.2-201ENST00000549699 147 ntBASIC28.12■■■□□ 2.09
USP44Q9H0E7 AL136162.1-201ENST00000607711 1078 ntBASIC28.12■■■□□ 2.09
USP44Q9H0E7 AC106739.1-201ENST00000617035 715 ntBASIC28.12■■■□□ 2.09
USP44Q9H0E7 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC28.12■■■□□ 2.09
USP44Q9H0E7 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC28.11■■■□□ 2.09
USP44Q9H0E7 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC28.11■■■□□ 2.09
USP44Q9H0E7 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
USP44Q9H0E7 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC28.11■■■□□ 2.09
USP44Q9H0E7 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC28.11■■■□□ 2.09
USP44Q9H0E7 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
USP44Q9H0E7 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC28.11■■■□□ 2.09
USP44Q9H0E7 AC092068.2-201ENST00000590491 1708 ntBASIC28.11■■■□□ 2.09
USP44Q9H0E7 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
USP44Q9H0E7 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
USP44Q9H0E7 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
USP44Q9H0E7 AL353803.4-201ENST00000565882 1934 ntBASIC28.1■■■□□ 2.09
USP44Q9H0E7 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
USP44Q9H0E7 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
USP44Q9H0E7 MIR638-201ENST00000385237 100 ntBASIC28.1■■■□□ 2.09
USP44Q9H0E7 PBX2P1-201ENST00000493219 1291 ntBASIC28.1■■■□□ 2.09
USP44Q9H0E7 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC28.1■■■□□ 2.09
USP44Q9H0E7 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
USP44Q9H0E7 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
USP44Q9H0E7 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
USP44Q9H0E7 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
USP44Q9H0E7 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC28.09■■■□□ 2.09
USP44Q9H0E7 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC28.09■■■□□ 2.09
USP44Q9H0E7 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC28.09■■■□□ 2.09
USP44Q9H0E7 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC28.09■■■□□ 2.09
USP44Q9H0E7 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC28.08■■■□□ 2.09
USP44Q9H0E7 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC28.08■■■□□ 2.09
USP44Q9H0E7 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC28.08■■■□□ 2.09
USP44Q9H0E7 AL499627.2-201ENST00000606283 725 ntBASIC28.08■■■□□ 2.09
USP44Q9H0E7 AL138724.1-201ENST00000606771 1088 ntBASIC28.08■■■□□ 2.09
USP44Q9H0E7 pRNA.6-201ENST00000610482 90 ntBASIC28.08■■■□□ 2.09
USP44Q9H0E7 pRNA.5-201ENST00000612139 90 ntBASIC28.08■■■□□ 2.09
USP44Q9H0E7 pRNA.11-201ENST00000618423 90 ntBASIC28.08■■■□□ 2.09
USP44Q9H0E7 pRNA.13-201ENST00000619112 90 ntBASIC28.08■■■□□ 2.09
USP44Q9H0E7 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
USP44Q9H0E7 AC135279.3-201ENST00000610945 1311 ntBASIC28.08■■■□□ 2.09
USP44Q9H0E7 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC28.08■■■□□ 2.09
USP44Q9H0E7 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC28.08■■■□□ 2.09
USP44Q9H0E7 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
USP44Q9H0E7 HES6-206ENST00000409574 738 ntTSL 2 BASIC28.07■■■□□ 2.08
USP44Q9H0E7 RALB-208ENST00000631312 311 ntTSL 5 BASIC28.07■■■□□ 2.08
USP44Q9H0E7 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC28.07■■■□□ 2.08
USP44Q9H0E7 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC28.07■■■□□ 2.08
USP44Q9H0E7 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC28.06■■■□□ 2.08
USP44Q9H0E7 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC28.06■■■□□ 2.08
USP44Q9H0E7 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC28.06■■■□□ 2.08
USP44Q9H0E7 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC28.06■■■□□ 2.08
USP44Q9H0E7 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC28.06■■■□□ 2.08
USP44Q9H0E7 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
USP44Q9H0E7 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC28.06■■■□□ 2.08
USP44Q9H0E7 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC28.06■■■□□ 2.08
USP44Q9H0E7 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
USP44Q9H0E7 AC133561.4-201ENST00000566112 224 ntBASIC28.06■■■□□ 2.08
USP44Q9H0E7 AL031432.3-201ENST00000607698 485 ntBASIC28.06■■■□□ 2.08
USP44Q9H0E7 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
USP44Q9H0E7 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC28.06■■■□□ 2.08
USP44Q9H0E7 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC28.06■■■□□ 2.08
USP44Q9H0E7 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
USP44Q9H0E7 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
USP44Q9H0E7 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
USP44Q9H0E7 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms