Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC18.62■□□□□ 0.57
SSX3Q99909 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SSX3Q99909 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SSX3Q99909 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SSX3Q99909 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
SSX3Q99909 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SSX3Q99909 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SSX3Q99909 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SSX3Q99909 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SSX3Q99909 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SSX3Q99909 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SSX3Q99909 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC18.61■□□□□ 0.57
SSX3Q99909 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SSX3Q99909 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC18.61■□□□□ 0.57
SSX3Q99909 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SSX3Q99909 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SSX3Q99909 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC18.61■□□□□ 0.57
SSX3Q99909 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SSX3Q99909 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
SSX3Q99909 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSX3Q99909 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SSX3Q99909 LSR-205ENST00000427250 1606 ntTSL 2 BASIC18.6■□□□□ 0.57
SSX3Q99909 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSX3Q99909 SLC25A24-204ENST00000569674 2357 ntBASIC18.6■□□□□ 0.57
SSX3Q99909 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC18.6■□□□□ 0.57
SSX3Q99909 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSX3Q99909 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSX3Q99909 SRR-208ENST00000576848 588 ntTSL 4 BASIC18.6■□□□□ 0.57
SSX3Q99909 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSX3Q99909 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSX3Q99909 LINC01124-201ENST00000409786 2117 ntBASIC18.59■□□□□ 0.57
SSX3Q99909 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SSX3Q99909 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SSX3Q99909 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SSX3Q99909 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC18.59■□□□□ 0.57
SSX3Q99909 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SSX3Q99909 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
SSX3Q99909 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
SSX3Q99909 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
SSX3Q99909 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SSX3Q99909 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC18.59■□□□□ 0.57
SSX3Q99909 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SSX3Q99909 CD72-202ENST00000378430 585 ntTSL 3 BASIC18.59■□□□□ 0.57
SSX3Q99909 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
SSX3Q99909 AK3-203ENST00000447596 705 ntTSL 2 BASIC18.59■□□□□ 0.57
SSX3Q99909 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC18.59■□□□□ 0.57
SSX3Q99909 AL356740.2-201ENST00000601559 647 ntBASIC18.59■□□□□ 0.57
SSX3Q99909 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC18.59■□□□□ 0.57
SSX3Q99909 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC18.59■□□□□ 0.57
SSX3Q99909 MIR6722-201ENST00000617286 78 ntBASIC18.59■□□□□ 0.57
SSX3Q99909 AL117332.1-201ENST00000622628 974 ntBASIC18.59■□□□□ 0.57
SSX3Q99909 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC18.59■□□□□ 0.57
SSX3Q99909 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC18.59■□□□□ 0.57
SSX3Q99909 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC18.59■□□□□ 0.57
SSX3Q99909 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC18.59■□□□□ 0.57
SSX3Q99909 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC18.58■□□□□ 0.57
SSX3Q99909 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC18.58■□□□□ 0.57
SSX3Q99909 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.58■□□□□ 0.57
SSX3Q99909 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
SSX3Q99909 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SSX3Q99909 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SSX3Q99909 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC18.58■□□□□ 0.56
SSX3Q99909 TRIR-202ENST00000588213 841 ntTSL 3 BASIC18.58■□□□□ 0.56
SSX3Q99909 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SSX3Q99909 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.58■□□□□ 0.56
SSX3Q99909 ME2-208ENST00000638937 2471 ntTSL 5 BASIC18.58■□□□□ 0.56
SSX3Q99909 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SSX3Q99909 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SSX3Q99909 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
SSX3Q99909 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SSX3Q99909 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SSX3Q99909 TFPT-201ENST00000391757 774 ntTSL 5 BASIC18.57■□□□□ 0.56
SSX3Q99909 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SSX3Q99909 AC004448.1-201ENST00000458332 883 ntBASIC18.57■□□□□ 0.56
SSX3Q99909 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC18.57■□□□□ 0.56
SSX3Q99909 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SSX3Q99909 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SSX3Q99909 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
SSX3Q99909 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SSX3Q99909 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC18.56■□□□□ 0.56
SSX3Q99909 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC18.56■□□□□ 0.56
SSX3Q99909 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SSX3Q99909 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC18.56■□□□□ 0.56
SSX3Q99909 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC18.56■□□□□ 0.56
SSX3Q99909 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SSX3Q99909 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SSX3Q99909 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SSX3Q99909 RPP21-222ENST00000433076 577 ntTSL 2 BASIC18.56■□□□□ 0.56
SSX3Q99909 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC18.56■□□□□ 0.56
SSX3Q99909 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC18.56■□□□□ 0.56
SSX3Q99909 MIR3621-201ENST00000580529 85 ntBASIC18.56■□□□□ 0.56
SSX3Q99909 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC18.56■□□□□ 0.56
SSX3Q99909 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC18.56■□□□□ 0.56
SSX3Q99909 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SSX3Q99909 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SSX3Q99909 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SSX3Q99909 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SSX3Q99909 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SSX3Q99909 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SSX3Q99909 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms