Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AL138781.1-201ENST00000566567 1274 ntBASIC22.5■■□□□ 1.19
VPS13AQ96RL7 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
VPS13AQ96RL7 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
VPS13AQ96RL7 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC22.5■■□□□ 1.19
VPS13AQ96RL7 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC22.5■■□□□ 1.19
VPS13AQ96RL7 AC004854.2-201ENST00000608450 1441 ntBASIC22.5■■□□□ 1.19
VPS13AQ96RL7 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
VPS13AQ96RL7 SLC6A10P-202ENST00000431994 2058 ntBASIC22.5■■□□□ 1.19
VPS13AQ96RL7 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
VPS13AQ96RL7 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC22.5■■□□□ 1.19
VPS13AQ96RL7 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
VPS13AQ96RL7 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
VPS13AQ96RL7 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
VPS13AQ96RL7 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
VPS13AQ96RL7 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
VPS13AQ96RL7 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC22.49■■□□□ 1.19
VPS13AQ96RL7 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
VPS13AQ96RL7 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
VPS13AQ96RL7 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
VPS13AQ96RL7 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
VPS13AQ96RL7 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
VPS13AQ96RL7 COX20-201ENST00000366528 568 ntTSL 2 BASIC22.48■■□□□ 1.19
VPS13AQ96RL7 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
VPS13AQ96RL7 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
VPS13AQ96RL7 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
VPS13AQ96RL7 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
VPS13AQ96RL7 AC098934.4-201ENST00000564127 592 ntBASIC22.48■■□□□ 1.19
VPS13AQ96RL7 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
VPS13AQ96RL7 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
VPS13AQ96RL7 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC22.47■■□□□ 1.19
VPS13AQ96RL7 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC22.47■■□□□ 1.19
VPS13AQ96RL7 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC22.47■■□□□ 1.19
VPS13AQ96RL7 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC22.47■■□□□ 1.19
VPS13AQ96RL7 TPRG1LP1-201ENST00000598702 760 ntBASIC22.47■■□□□ 1.19
VPS13AQ96RL7 pRNA.6-201ENST00000610482 90 ntBASIC22.47■■□□□ 1.19
VPS13AQ96RL7 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC22.47■■□□□ 1.19
VPS13AQ96RL7 pRNA.5-201ENST00000612139 90 ntBASIC22.47■■□□□ 1.19
VPS13AQ96RL7 pRNA.11-201ENST00000618423 90 ntBASIC22.47■■□□□ 1.19
VPS13AQ96RL7 pRNA.13-201ENST00000619112 90 ntBASIC22.47■■□□□ 1.19
VPS13AQ96RL7 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
VPS13AQ96RL7 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC22.47■■□□□ 1.19
VPS13AQ96RL7 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
VPS13AQ96RL7 BID-214ENST00000617586 542 ntTSL 5 BASIC22.47■■□□□ 1.19
VPS13AQ96RL7 APTR-205ENST00000447009 902 ntTSL 2 BASIC22.46■■□□□ 1.19
VPS13AQ96RL7 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC22.46■■□□□ 1.19
VPS13AQ96RL7 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC22.46■■□□□ 1.19
VPS13AQ96RL7 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
VPS13AQ96RL7 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
VPS13AQ96RL7 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
VPS13AQ96RL7 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
VPS13AQ96RL7 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC22.46■■□□□ 1.19
VPS13AQ96RL7 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC22.46■■□□□ 1.19
VPS13AQ96RL7 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
VPS13AQ96RL7 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
VPS13AQ96RL7 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
VPS13AQ96RL7 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC22.45■■□□□ 1.18
VPS13AQ96RL7 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
VPS13AQ96RL7 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
VPS13AQ96RL7 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
VPS13AQ96RL7 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
VPS13AQ96RL7 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC22.45■■□□□ 1.18
VPS13AQ96RL7 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC22.45■■□□□ 1.18
VPS13AQ96RL7 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC22.44■■□□□ 1.18
VPS13AQ96RL7 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC22.44■■□□□ 1.18
VPS13AQ96RL7 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC22.44■■□□□ 1.18
VPS13AQ96RL7 AC098590.1-201ENST00000468126 897 ntBASIC22.44■■□□□ 1.18
VPS13AQ96RL7 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC22.44■■□□□ 1.18
VPS13AQ96RL7 AC135731.1-201ENST00000569415 2548 ntBASIC22.44■■□□□ 1.18
VPS13AQ96RL7 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
VPS13AQ96RL7 AC069152.1-201ENST00000438030 544 ntBASIC22.44■■□□□ 1.18
VPS13AQ96RL7 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
VPS13AQ96RL7 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
VPS13AQ96RL7 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
VPS13AQ96RL7 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
VPS13AQ96RL7 SLC7A5P2-201ENST00000553010 536 ntBASIC22.43■■□□□ 1.18
VPS13AQ96RL7 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC22.43■■□□□ 1.18
VPS13AQ96RL7 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
VPS13AQ96RL7 PRORSD1P-201ENST00000295112 541 ntBASIC22.43■■□□□ 1.18
VPS13AQ96RL7 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC22.43■■□□□ 1.18
VPS13AQ96RL7 LINC02228-203ENST00000641970 1355 ntBASIC22.43■■□□□ 1.18
VPS13AQ96RL7 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
VPS13AQ96RL7 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
VPS13AQ96RL7 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
VPS13AQ96RL7 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
VPS13AQ96RL7 AL050303.2-201ENST00000619798 666 ntBASIC22.42■■□□□ 1.18
VPS13AQ96RL7 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC22.42■■□□□ 1.18
VPS13AQ96RL7 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC22.42■■□□□ 1.18
VPS13AQ96RL7 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
VPS13AQ96RL7 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
VPS13AQ96RL7 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
VPS13AQ96RL7 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC22.42■■□□□ 1.18
VPS13AQ96RL7 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC22.42■■□□□ 1.18
VPS13AQ96RL7 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
VPS13AQ96RL7 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
VPS13AQ96RL7 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC22.42■■□□□ 1.18
VPS13AQ96RL7 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
VPS13AQ96RL7 AC009086.3-201ENST00000623486 1008 ntBASIC22.42■■□□□ 1.18
VPS13AQ96RL7 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
VPS13AQ96RL7 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
VPS13AQ96RL7 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC22.41■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms