Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 PTCHD3P2-201ENST00000424937 1205 ntBASIC31.54■■■□□ 2.64
USP47Q96K76 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC31.53■■■□□ 2.64
USP47Q96K76 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
USP47Q96K76 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
USP47Q96K76 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC31.53■■■□□ 2.64
USP47Q96K76 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
USP47Q96K76 MIR638-201ENST00000385237 100 ntBASIC31.53■■■□□ 2.64
USP47Q96K76 SERBP1P1-201ENST00000396021 1160 ntBASIC31.53■■■□□ 2.64
USP47Q96K76 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC31.53■■■□□ 2.64
USP47Q96K76 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
USP47Q96K76 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC31.53■■■□□ 2.64
USP47Q96K76 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC31.53■■■□□ 2.64
USP47Q96K76 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC31.53■■■□□ 2.64
USP47Q96K76 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC31.52■■■□□ 2.64
USP47Q96K76 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC31.52■■■□□ 2.64
USP47Q96K76 DUX4L4-201ENST00000566884 1269 ntBASIC31.52■■■□□ 2.64
USP47Q96K76 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
USP47Q96K76 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
USP47Q96K76 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC31.52■■■□□ 2.64
USP47Q96K76 FP325331.1-202ENST00000623531 1380 ntBASIC31.51■■■□□ 2.64
USP47Q96K76 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC31.51■■■□□ 2.64
USP47Q96K76 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC31.51■■■□□ 2.64
USP47Q96K76 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
USP47Q96K76 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
USP47Q96K76 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
USP47Q96K76 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC31.51■■■□□ 2.63
USP47Q96K76 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC31.51■■■□□ 2.63
USP47Q96K76 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC31.51■■■□□ 2.63
USP47Q96K76 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC31.51■■■□□ 2.63
USP47Q96K76 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
USP47Q96K76 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
USP47Q96K76 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
USP47Q96K76 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC31.5■■■□□ 2.63
USP47Q96K76 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
USP47Q96K76 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC31.5■■■□□ 2.63
USP47Q96K76 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
USP47Q96K76 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
USP47Q96K76 LINC01529-204ENST00000636474 1715 ntBASIC31.49■■■□□ 2.63
USP47Q96K76 AL353803.4-201ENST00000565882 1934 ntBASIC31.49■■■□□ 2.63
USP47Q96K76 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC31.49■■■□□ 2.63
USP47Q96K76 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC31.49■■■□□ 2.63
USP47Q96K76 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC31.49■■■□□ 2.63
USP47Q96K76 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC31.48■■■□□ 2.63
USP47Q96K76 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC31.48■■■□□ 2.63
USP47Q96K76 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC31.48■■■□□ 2.63
USP47Q96K76 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC31.48■■■□□ 2.63
USP47Q96K76 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
USP47Q96K76 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
USP47Q96K76 AC092171.4-201ENST00000609130 632 ntBASIC31.48■■■□□ 2.63
USP47Q96K76 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
USP47Q96K76 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
USP47Q96K76 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC31.48■■■□□ 2.63
USP47Q96K76 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
USP47Q96K76 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC31.47■■■□□ 2.63
USP47Q96K76 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
USP47Q96K76 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC31.47■■■□□ 2.63
USP47Q96K76 MIR3181-201ENST00000578512 73 ntBASIC31.47■■■□□ 2.63
USP47Q96K76 SF1-220ENST00000626028 704 ntTSL 2 BASIC31.47■■■□□ 2.63
USP47Q96K76 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
USP47Q96K76 SYT6-210ENST00000641643 1587 ntBASIC31.47■■■□□ 2.63
USP47Q96K76 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC31.47■■■□□ 2.63
USP47Q96K76 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC31.47■■■□□ 2.63
USP47Q96K76 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
USP47Q96K76 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC31.46■■■□□ 2.63
USP47Q96K76 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC31.46■■■□□ 2.63
USP47Q96K76 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC31.46■■■□□ 2.63
USP47Q96K76 UNC93B3-201ENST00000308076 687 ntBASIC31.46■■■□□ 2.63
USP47Q96K76 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC31.46■■■□□ 2.63
USP47Q96K76 NALT1-201ENST00000429224 738 ntTSL 5 BASIC31.46■■■□□ 2.63
USP47Q96K76 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC31.46■■■□□ 2.63
USP47Q96K76 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC31.46■■■□□ 2.63
USP47Q96K76 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC31.46■■■□□ 2.63
USP47Q96K76 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC31.46■■■□□ 2.63
USP47Q96K76 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
USP47Q96K76 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC31.46■■■□□ 2.63
USP47Q96K76 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC31.46■■■□□ 2.63
USP47Q96K76 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC31.46■■■□□ 2.63
USP47Q96K76 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC31.46■■■□□ 2.63
USP47Q96K76 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
USP47Q96K76 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC31.45■■■□□ 2.63
USP47Q96K76 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC31.45■■■□□ 2.63
USP47Q96K76 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC31.45■■■□□ 2.63
USP47Q96K76 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
USP47Q96K76 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
USP47Q96K76 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
USP47Q96K76 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
USP47Q96K76 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC31.45■■■□□ 2.62
USP47Q96K76 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
USP47Q96K76 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC31.44■■■□□ 2.62
USP47Q96K76 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC31.44■■■□□ 2.62
USP47Q96K76 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC31.44■■■□□ 2.62
USP47Q96K76 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
USP47Q96K76 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
USP47Q96K76 DUX4L19-201ENST00000557448 1267 ntBASIC31.44■■■□□ 2.62
USP47Q96K76 pRNA.6-201ENST00000610482 90 ntBASIC31.44■■■□□ 2.62
USP47Q96K76 pRNA.5-201ENST00000612139 90 ntBASIC31.44■■■□□ 2.62
USP47Q96K76 pRNA.11-201ENST00000618423 90 ntBASIC31.44■■■□□ 2.62
USP47Q96K76 pRNA.13-201ENST00000619112 90 ntBASIC31.44■■■□□ 2.62
USP47Q96K76 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
USP47Q96K76 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms