Protein–RNA interactions for Protein: Q96CG8

CTHRC1, Collagen triple helix repeat-containing protein 1, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1Q96CG8 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CTHRC1Q96CG8 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.88■□□□□ 0.93
CTHRC1Q96CG8 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CTHRC1Q96CG8 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.88■□□□□ 0.93
CTHRC1Q96CG8 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.88■□□□□ 0.93
CTHRC1Q96CG8 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.87■□□□□ 0.93
CTHRC1Q96CG8 LINC01529-204ENST00000636474 1715 ntBASIC20.87■□□□□ 0.93
CTHRC1Q96CG8 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CTHRC1Q96CG8 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CTHRC1Q96CG8 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
CTHRC1Q96CG8 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.87■□□□□ 0.93
CTHRC1Q96CG8 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.87■□□□□ 0.93
CTHRC1Q96CG8 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.87■□□□□ 0.93
CTHRC1Q96CG8 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
CTHRC1Q96CG8 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CTHRC1Q96CG8 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
CTHRC1Q96CG8 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CTHRC1Q96CG8 DUX4L4-201ENST00000566884 1269 ntBASIC20.86■□□□□ 0.93
CTHRC1Q96CG8 AC131212.1-201ENST00000613771 668 ntBASIC20.86■□□□□ 0.93
CTHRC1Q96CG8 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.86■□□□□ 0.93
CTHRC1Q96CG8 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.86■□□□□ 0.93
CTHRC1Q96CG8 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CTHRC1Q96CG8 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
CTHRC1Q96CG8 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CTHRC1Q96CG8 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CTHRC1Q96CG8 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.85■□□□□ 0.93
CTHRC1Q96CG8 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
CTHRC1Q96CG8 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
CTHRC1Q96CG8 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CTHRC1Q96CG8 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CTHRC1Q96CG8 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
CTHRC1Q96CG8 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CTHRC1Q96CG8 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.85■□□□□ 0.93
CTHRC1Q96CG8 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.85■□□□□ 0.93
CTHRC1Q96CG8 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.85■□□□□ 0.93
CTHRC1Q96CG8 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.84■□□□□ 0.93
CTHRC1Q96CG8 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CTHRC1Q96CG8 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CTHRC1Q96CG8 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CTHRC1Q96CG8 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CTHRC1Q96CG8 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.84■□□□□ 0.93
CTHRC1Q96CG8 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.84■□□□□ 0.93
CTHRC1Q96CG8 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.84■□□□□ 0.93
CTHRC1Q96CG8 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CTHRC1Q96CG8 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CTHRC1Q96CG8 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.84■□□□□ 0.93
CTHRC1Q96CG8 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
CTHRC1Q96CG8 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CTHRC1Q96CG8 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC20.84■□□□□ 0.93
CTHRC1Q96CG8 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.83■□□□□ 0.93
CTHRC1Q96CG8 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CTHRC1Q96CG8 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CTHRC1Q96CG8 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CTHRC1Q96CG8 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
CTHRC1Q96CG8 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.83■□□□□ 0.93
CTHRC1Q96CG8 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.83■□□□□ 0.93
CTHRC1Q96CG8 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CTHRC1Q96CG8 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CTHRC1Q96CG8 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.92
CTHRC1Q96CG8 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
CTHRC1Q96CG8 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
CTHRC1Q96CG8 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.82■□□□□ 0.92
CTHRC1Q96CG8 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.82■□□□□ 0.92
CTHRC1Q96CG8 AC131281.2-201ENST00000520478 145 ntBASIC20.82■□□□□ 0.92
CTHRC1Q96CG8 MIR4466-201ENST00000606121 54 ntBASIC20.82■□□□□ 0.92
CTHRC1Q96CG8 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.82■□□□□ 0.92
CTHRC1Q96CG8 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CTHRC1Q96CG8 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CTHRC1Q96CG8 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.82■□□□□ 0.92
CTHRC1Q96CG8 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.82■□□□□ 0.92
CTHRC1Q96CG8 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CTHRC1Q96CG8 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
CTHRC1Q96CG8 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.82■□□□□ 0.92
CTHRC1Q96CG8 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CTHRC1Q96CG8 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CTHRC1Q96CG8 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CTHRC1Q96CG8 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.81■□□□□ 0.92
CTHRC1Q96CG8 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CTHRC1Q96CG8 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CTHRC1Q96CG8 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.81■□□□□ 0.92
CTHRC1Q96CG8 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.81■□□□□ 0.92
CTHRC1Q96CG8 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CTHRC1Q96CG8 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.81■□□□□ 0.92
CTHRC1Q96CG8 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.81■□□□□ 0.92
CTHRC1Q96CG8 AC241377.3-202ENST00000626088 1088 ntBASIC20.81■□□□□ 0.92
CTHRC1Q96CG8 AC241585.3-202ENST00000628937 1088 ntBASIC20.81■□□□□ 0.92
CTHRC1Q96CG8 AC245100.8-202ENST00000629247 1058 ntBASIC20.81■□□□□ 0.92
CTHRC1Q96CG8 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.81■□□□□ 0.92
CTHRC1Q96CG8 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
CTHRC1Q96CG8 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.81■□□□□ 0.92
CTHRC1Q96CG8 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CTHRC1Q96CG8 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CTHRC1Q96CG8 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CTHRC1Q96CG8 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
CTHRC1Q96CG8 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CTHRC1Q96CG8 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CTHRC1Q96CG8 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.8■□□□□ 0.92
CTHRC1Q96CG8 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CTHRC1Q96CG8 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.8■□□□□ 0.92
CTHRC1Q96CG8 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms