Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 AC110285.6-201ENST00000617652 491 ntBASIC20.75■□□□□ 0.91
C9orf40Q8IXQ3 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
C9orf40Q8IXQ3 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.75■□□□□ 0.91
C9orf40Q8IXQ3 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
C9orf40Q8IXQ3 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.74■□□□□ 0.91
C9orf40Q8IXQ3 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.74■□□□□ 0.91
C9orf40Q8IXQ3 FP325331.1-202ENST00000623531 1380 ntBASIC20.74■□□□□ 0.91
C9orf40Q8IXQ3 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
C9orf40Q8IXQ3 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
C9orf40Q8IXQ3 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
C9orf40Q8IXQ3 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.74■□□□□ 0.91
C9orf40Q8IXQ3 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.74■□□□□ 0.91
C9orf40Q8IXQ3 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.74■□□□□ 0.91
C9orf40Q8IXQ3 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.74■□□□□ 0.91
C9orf40Q8IXQ3 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
C9orf40Q8IXQ3 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
C9orf40Q8IXQ3 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.74■□□□□ 0.91
C9orf40Q8IXQ3 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
C9orf40Q8IXQ3 LINC01529-204ENST00000636474 1715 ntBASIC20.73■□□□□ 0.91
C9orf40Q8IXQ3 SYT6-210ENST00000641643 1587 ntBASIC20.73■□□□□ 0.91
C9orf40Q8IXQ3 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
C9orf40Q8IXQ3 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
C9orf40Q8IXQ3 UNC93B3-201ENST00000308076 687 ntBASIC20.73■□□□□ 0.91
C9orf40Q8IXQ3 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
C9orf40Q8IXQ3 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.73■□□□□ 0.91
C9orf40Q8IXQ3 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
C9orf40Q8IXQ3 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.73■□□□□ 0.91
C9orf40Q8IXQ3 DUX4L19-201ENST00000557448 1267 ntBASIC20.73■□□□□ 0.91
C9orf40Q8IXQ3 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
C9orf40Q8IXQ3 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
C9orf40Q8IXQ3 AC092068.2-201ENST00000590491 1708 ntBASIC20.73■□□□□ 0.91
C9orf40Q8IXQ3 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
C9orf40Q8IXQ3 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
C9orf40Q8IXQ3 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
C9orf40Q8IXQ3 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
C9orf40Q8IXQ3 SERBP1P1-201ENST00000396021 1160 ntBASIC20.72■□□□□ 0.91
C9orf40Q8IXQ3 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.72■□□□□ 0.91
C9orf40Q8IXQ3 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
C9orf40Q8IXQ3 DUX4L4-201ENST00000566884 1269 ntBASIC20.72■□□□□ 0.91
C9orf40Q8IXQ3 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
C9orf40Q8IXQ3 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
C9orf40Q8IXQ3 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.72■□□□□ 0.91
C9orf40Q8IXQ3 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.72■□□□□ 0.91
C9orf40Q8IXQ3 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
C9orf40Q8IXQ3 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.71■□□□□ 0.91
C9orf40Q8IXQ3 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
C9orf40Q8IXQ3 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
C9orf40Q8IXQ3 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.71■□□□□ 0.91
C9orf40Q8IXQ3 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.71■□□□□ 0.91
C9orf40Q8IXQ3 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.71■□□□□ 0.91
C9orf40Q8IXQ3 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.71■□□□□ 0.91
C9orf40Q8IXQ3 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
C9orf40Q8IXQ3 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
C9orf40Q8IXQ3 AL139246.5-201ENST00000606645 996 ntBASIC20.71■□□□□ 0.91
C9orf40Q8IXQ3 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
C9orf40Q8IXQ3 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
C9orf40Q8IXQ3 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.71■□□□□ 0.91
C9orf40Q8IXQ3 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
C9orf40Q8IXQ3 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.91
C9orf40Q8IXQ3 AL353803.4-201ENST00000565882 1934 ntBASIC20.7■□□□□ 0.91
C9orf40Q8IXQ3 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
C9orf40Q8IXQ3 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.7■□□□□ 0.9
C9orf40Q8IXQ3 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
C9orf40Q8IXQ3 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
C9orf40Q8IXQ3 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
C9orf40Q8IXQ3 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.7■□□□□ 0.9
C9orf40Q8IXQ3 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
C9orf40Q8IXQ3 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
C9orf40Q8IXQ3 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.7■□□□□ 0.9
C9orf40Q8IXQ3 AL136162.1-201ENST00000607711 1078 ntBASIC20.7■□□□□ 0.9
C9orf40Q8IXQ3 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.7■□□□□ 0.9
C9orf40Q8IXQ3 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
C9orf40Q8IXQ3 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
C9orf40Q8IXQ3 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
C9orf40Q8IXQ3 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
C9orf40Q8IXQ3 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
C9orf40Q8IXQ3 MIR3181-201ENST00000578512 73 ntBASIC20.69■□□□□ 0.9
C9orf40Q8IXQ3 pRNA.6-201ENST00000610482 90 ntBASIC20.69■□□□□ 0.9
C9orf40Q8IXQ3 pRNA.5-201ENST00000612139 90 ntBASIC20.69■□□□□ 0.9
C9orf40Q8IXQ3 pRNA.11-201ENST00000618423 90 ntBASIC20.69■□□□□ 0.9
C9orf40Q8IXQ3 pRNA.13-201ENST00000619112 90 ntBASIC20.69■□□□□ 0.9
C9orf40Q8IXQ3 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
C9orf40Q8IXQ3 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.69■□□□□ 0.9
C9orf40Q8IXQ3 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
C9orf40Q8IXQ3 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.69■□□□□ 0.9
C9orf40Q8IXQ3 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
C9orf40Q8IXQ3 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.69■□□□□ 0.9
C9orf40Q8IXQ3 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.69■□□□□ 0.9
C9orf40Q8IXQ3 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
C9orf40Q8IXQ3 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
C9orf40Q8IXQ3 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
C9orf40Q8IXQ3 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.68■□□□□ 0.9
C9orf40Q8IXQ3 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
C9orf40Q8IXQ3 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.68■□□□□ 0.9
C9orf40Q8IXQ3 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
C9orf40Q8IXQ3 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.68■□□□□ 0.9
C9orf40Q8IXQ3 AC024257.2-201ENST00000549699 147 ntBASIC20.68■□□□□ 0.9
C9orf40Q8IXQ3 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.68■□□□□ 0.9
C9orf40Q8IXQ3 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
C9orf40Q8IXQ3 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms