Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC12.58□□□□□ -0.4
UBR4Q5T4S7 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC12.58□□□□□ -0.4
UBR4Q5T4S7 AC091060.1-201ENST00000623524 1766 ntBASIC12.58□□□□□ -0.4
UBR4Q5T4S7 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC12.58□□□□□ -0.4
UBR4Q5T4S7 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC12.58□□□□□ -0.4
UBR4Q5T4S7 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC12.58□□□□□ -0.4
UBR4Q5T4S7 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC12.58□□□□□ -0.4
UBR4Q5T4S7 AF201337.1-201ENST00000520239 748 ntBASIC12.58□□□□□ -0.4
UBR4Q5T4S7 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC12.58□□□□□ -0.4
UBR4Q5T4S7 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
UBR4Q5T4S7 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
UBR4Q5T4S7 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC12.58□□□□□ -0.4
UBR4Q5T4S7 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC12.58□□□□□ -0.4
UBR4Q5T4S7 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC12.58□□□□□ -0.4
UBR4Q5T4S7 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
UBR4Q5T4S7 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
UBR4Q5T4S7 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
UBR4Q5T4S7 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
UBR4Q5T4S7 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC12.58□□□□□ -0.4
UBR4Q5T4S7 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
UBR4Q5T4S7 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
UBR4Q5T4S7 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
UBR4Q5T4S7 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
UBR4Q5T4S7 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC12.57□□□□□ -0.4
UBR4Q5T4S7 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC12.57□□□□□ -0.4
UBR4Q5T4S7 AC073648.6-201ENST00000641589 218 ntBASIC12.57□□□□□ -0.4
UBR4Q5T4S7 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
UBR4Q5T4S7 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
UBR4Q5T4S7 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
UBR4Q5T4S7 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
UBR4Q5T4S7 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
UBR4Q5T4S7 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
UBR4Q5T4S7 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
UBR4Q5T4S7 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
UBR4Q5T4S7 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
UBR4Q5T4S7 AC133041.1-202ENST00000642053 222 ntBASIC12.57□□□□□ -0.4
UBR4Q5T4S7 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
UBR4Q5T4S7 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
UBR4Q5T4S7 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
UBR4Q5T4S7 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
UBR4Q5T4S7 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
UBR4Q5T4S7 IRX5-204ENST00000560154 879 ntTSL 5 BASIC12.57□□□□□ -0.4
UBR4Q5T4S7 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
UBR4Q5T4S7 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC12.57□□□□□ -0.4
UBR4Q5T4S7 GTSE1-AS1-202ENST00000623117 1518 ntBASIC12.57□□□□□ -0.4
UBR4Q5T4S7 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC12.56□□□□□ -0.4
UBR4Q5T4S7 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC12.56□□□□□ -0.4
UBR4Q5T4S7 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
UBR4Q5T4S7 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
UBR4Q5T4S7 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC12.56□□□□□ -0.4
UBR4Q5T4S7 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC12.56□□□□□ -0.4
UBR4Q5T4S7 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
UBR4Q5T4S7 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC12.56□□□□□ -0.4
UBR4Q5T4S7 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
UBR4Q5T4S7 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC12.55□□□□□ -0.4
UBR4Q5T4S7 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC12.55□□□□□ -0.4
UBR4Q5T4S7 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
UBR4Q5T4S7 SNORA78-201ENST00000459373 127 ntBASIC12.55□□□□□ -0.4
UBR4Q5T4S7 FOXO3B-201ENST00000395675 1928 ntBASIC12.55□□□□□ -0.4
UBR4Q5T4S7 KRT18P11-201ENST00000435214 1283 ntBASIC12.55□□□□□ -0.4
UBR4Q5T4S7 AC105036.2-201ENST00000569468 176 ntBASIC12.55□□□□□ -0.4
UBR4Q5T4S7 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
UBR4Q5T4S7 C2orf69P4-201ENST00000565394 541 ntBASIC12.55□□□□□ -0.4
UBR4Q5T4S7 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
UBR4Q5T4S7 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
UBR4Q5T4S7 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
UBR4Q5T4S7 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC12.55□□□□□ -0.4
UBR4Q5T4S7 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC12.55□□□□□ -0.4
UBR4Q5T4S7 TK2-213ENST00000563369 882 ntTSL 5 BASIC12.55□□□□□ -0.4
UBR4Q5T4S7 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC12.55□□□□□ -0.4
UBR4Q5T4S7 MARS-234ENST00000630571 216 ntTSL 5 BASIC12.55□□□□□ -0.4
UBR4Q5T4S7 MARS-235ENST00000630803 183 ntTSL 3 BASIC12.55□□□□□ -0.4
UBR4Q5T4S7 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
UBR4Q5T4S7 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC12.54□□□□□ -0.4
UBR4Q5T4S7 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC12.54□□□□□ -0.4
UBR4Q5T4S7 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC12.54□□□□□ -0.4
UBR4Q5T4S7 REXO1L12P-201ENST00000622156 912 ntBASIC12.54□□□□□ -0.4
UBR4Q5T4S7 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
UBR4Q5T4S7 ST7-AS1-201ENST00000456775 1889 ntBASIC12.54□□□□□ -0.4
UBR4Q5T4S7 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC12.54□□□□□ -0.4
UBR4Q5T4S7 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
UBR4Q5T4S7 pRNA.6-201ENST00000610482 90 ntBASIC12.54□□□□□ -0.4
UBR4Q5T4S7 pRNA.5-201ENST00000612139 90 ntBASIC12.54□□□□□ -0.4
UBR4Q5T4S7 pRNA.11-201ENST00000618423 90 ntBASIC12.54□□□□□ -0.4
UBR4Q5T4S7 pRNA.13-201ENST00000619112 90 ntBASIC12.54□□□□□ -0.4
UBR4Q5T4S7 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC12.54□□□□□ -0.4
UBR4Q5T4S7 AC090877.2-201ENST00000558441 1738 ntBASIC12.54□□□□□ -0.4
UBR4Q5T4S7 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
UBR4Q5T4S7 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
UBR4Q5T4S7 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
UBR4Q5T4S7 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC12.54□□□□□ -0.4
UBR4Q5T4S7 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC12.54□□□□□ -0.4
UBR4Q5T4S7 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
UBR4Q5T4S7 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
UBR4Q5T4S7 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
UBR4Q5T4S7 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
UBR4Q5T4S7 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
UBR4Q5T4S7 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
UBR4Q5T4S7 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC12.53□□□□□ -0.4
UBR4Q5T4S7 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC12.53□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms