Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC144BQ3MJ40 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC144BQ3MJ40 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC144BQ3MJ40 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC25.98■■□□□ 1.75
CCDC144BQ3MJ40 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC144BQ3MJ40 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC144BQ3MJ40 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC25.98■■□□□ 1.75
CCDC144BQ3MJ40 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC144BQ3MJ40 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC25.98■■□□□ 1.75
CCDC144BQ3MJ40 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
CCDC144BQ3MJ40 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC25.97■■□□□ 1.75
CCDC144BQ3MJ40 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC25.97■■□□□ 1.75
CCDC144BQ3MJ40 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
CCDC144BQ3MJ40 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
CCDC144BQ3MJ40 STK32C-205ENST00000456004 607 ntTSL 2 BASIC25.97■■□□□ 1.75
CCDC144BQ3MJ40 AC092171.4-201ENST00000609130 632 ntBASIC25.97■■□□□ 1.75
CCDC144BQ3MJ40 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC25.97■■□□□ 1.75
CCDC144BQ3MJ40 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
CCDC144BQ3MJ40 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC25.96■■□□□ 1.75
CCDC144BQ3MJ40 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC25.96■■□□□ 1.75
CCDC144BQ3MJ40 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC25.96■■□□□ 1.75
CCDC144BQ3MJ40 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
CCDC144BQ3MJ40 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC25.96■■□□□ 1.75
CCDC144BQ3MJ40 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
CCDC144BQ3MJ40 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC25.96■■□□□ 1.75
CCDC144BQ3MJ40 MIR4767-201ENST00000582827 78 ntBASIC25.96■■□□□ 1.75
CCDC144BQ3MJ40 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC25.96■■□□□ 1.75
CCDC144BQ3MJ40 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC25.96■■□□□ 1.75
CCDC144BQ3MJ40 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC25.96■■□□□ 1.75
CCDC144BQ3MJ40 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
CCDC144BQ3MJ40 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC25.96■■□□□ 1.75
CCDC144BQ3MJ40 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC25.96■■□□□ 1.75
CCDC144BQ3MJ40 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
CCDC144BQ3MJ40 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
CCDC144BQ3MJ40 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
CCDC144BQ3MJ40 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC25.95■■□□□ 1.75
CCDC144BQ3MJ40 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
CCDC144BQ3MJ40 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
CCDC144BQ3MJ40 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
CCDC144BQ3MJ40 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC25.95■■□□□ 1.74
CCDC144BQ3MJ40 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC25.94■■□□□ 1.74
CCDC144BQ3MJ40 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
CCDC144BQ3MJ40 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC25.94■■□□□ 1.74
CCDC144BQ3MJ40 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
CCDC144BQ3MJ40 SERBP1P1-201ENST00000396021 1160 ntBASIC25.94■■□□□ 1.74
CCDC144BQ3MJ40 STOX2-205ENST00000513034 807 ntTSL 3 BASIC25.94■■□□□ 1.74
CCDC144BQ3MJ40 AC099791.2-201ENST00000605725 427 ntBASIC25.94■■□□□ 1.74
CCDC144BQ3MJ40 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
CCDC144BQ3MJ40 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC25.94■■□□□ 1.74
CCDC144BQ3MJ40 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
CCDC144BQ3MJ40 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC25.93■■□□□ 1.74
CCDC144BQ3MJ40 PTMA-205ENST00000410064 814 ntTSL 2 BASIC25.93■■□□□ 1.74
CCDC144BQ3MJ40 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
CCDC144BQ3MJ40 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CCDC144BQ3MJ40 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC25.93■■□□□ 1.74
CCDC144BQ3MJ40 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CCDC144BQ3MJ40 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC25.93■■□□□ 1.74
CCDC144BQ3MJ40 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC25.92■■□□□ 1.74
CCDC144BQ3MJ40 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
CCDC144BQ3MJ40 AC091305.1-201ENST00000479476 895 ntBASIC25.92■■□□□ 1.74
CCDC144BQ3MJ40 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC25.92■■□□□ 1.74
CCDC144BQ3MJ40 MIR5787-201ENST00000611784 55 ntBASIC25.92■■□□□ 1.74
CCDC144BQ3MJ40 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
CCDC144BQ3MJ40 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC25.92■■□□□ 1.74
CCDC144BQ3MJ40 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC25.92■■□□□ 1.74
CCDC144BQ3MJ40 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
CCDC144BQ3MJ40 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
CCDC144BQ3MJ40 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CCDC144BQ3MJ40 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
CCDC144BQ3MJ40 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC25.91■■□□□ 1.74
CCDC144BQ3MJ40 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CCDC144BQ3MJ40 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CCDC144BQ3MJ40 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC25.91■■□□□ 1.74
CCDC144BQ3MJ40 RBM38-205ENST00000440234 686 ntTSL 2 BASIC25.91■■□□□ 1.74
CCDC144BQ3MJ40 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC25.91■■□□□ 1.74
CCDC144BQ3MJ40 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC25.91■■□□□ 1.74
CCDC144BQ3MJ40 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CCDC144BQ3MJ40 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CCDC144BQ3MJ40 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CCDC144BQ3MJ40 CLDN5-201ENST00000403084 2357 ntBASIC25.91■■□□□ 1.74
CCDC144BQ3MJ40 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
CCDC144BQ3MJ40 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CCDC144BQ3MJ40 AC009102.2-201ENST00000606772 1639 ntBASIC25.9■■□□□ 1.74
CCDC144BQ3MJ40 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
CCDC144BQ3MJ40 MAG-206ENST00000597035 542 ntTSL 4 BASIC25.9■■□□□ 1.74
CCDC144BQ3MJ40 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
CCDC144BQ3MJ40 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
CCDC144BQ3MJ40 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC25.9■■□□□ 1.74
CCDC144BQ3MJ40 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC25.9■■□□□ 1.74
CCDC144BQ3MJ40 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC25.89■■□□□ 1.74
CCDC144BQ3MJ40 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC25.89■■□□□ 1.74
CCDC144BQ3MJ40 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC25.89■■□□□ 1.74
CCDC144BQ3MJ40 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC25.89■■□□□ 1.74
CCDC144BQ3MJ40 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
CCDC144BQ3MJ40 PTCHD3P2-201ENST00000424937 1205 ntBASIC25.89■■□□□ 1.74
CCDC144BQ3MJ40 MIR6089-201ENST00000616698 64 ntBASIC25.89■■□□□ 1.74
CCDC144BQ3MJ40 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
CCDC144BQ3MJ40 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
CCDC144BQ3MJ40 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC25.88■■□□□ 1.73
CCDC144BQ3MJ40 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms