Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 MIR4466-201ENST00000606121 54 ntBASIC20.05■□□□□ 0.8
H3F3AP84243 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.05■□□□□ 0.8
H3F3AP84243 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.05■□□□□ 0.8
H3F3AP84243 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
H3F3AP84243 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
H3F3AP84243 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.05■□□□□ 0.8
H3F3AP84243 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
H3F3AP84243 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
H3F3AP84243 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
H3F3AP84243 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.04■□□□□ 0.8
H3F3AP84243 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.04■□□□□ 0.8
H3F3AP84243 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
H3F3AP84243 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
H3F3AP84243 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
H3F3AP84243 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
H3F3AP84243 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
H3F3AP84243 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
H3F3AP84243 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
H3F3AP84243 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.03■□□□□ 0.8
H3F3AP84243 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.03■□□□□ 0.8
H3F3AP84243 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
H3F3AP84243 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
H3F3AP84243 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.02■□□□□ 0.8
H3F3AP84243 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.02■□□□□ 0.8
H3F3AP84243 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
H3F3AP84243 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
H3F3AP84243 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
H3F3AP84243 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.02■□□□□ 0.8
H3F3AP84243 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
H3F3AP84243 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.02■□□□□ 0.8
H3F3AP84243 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
H3F3AP84243 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
H3F3AP84243 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
H3F3AP84243 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
H3F3AP84243 LINC01529-204ENST00000636474 1715 ntBASIC20.02■□□□□ 0.79
H3F3AP84243 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
H3F3AP84243 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
H3F3AP84243 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
H3F3AP84243 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
H3F3AP84243 DUSP8P3-201ENST00000399571 1760 ntBASIC20.01■□□□□ 0.79
H3F3AP84243 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
H3F3AP84243 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.01■□□□□ 0.79
H3F3AP84243 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
H3F3AP84243 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.01■□□□□ 0.79
H3F3AP84243 DUX4L4-201ENST00000566884 1269 ntBASIC20.01■□□□□ 0.79
H3F3AP84243 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
H3F3AP84243 AL353803.4-201ENST00000565882 1934 ntBASIC20.01■□□□□ 0.79
H3F3AP84243 DUSP8P5-201ENST00000422884 1815 ntBASIC20.01■□□□□ 0.79
H3F3AP84243 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
H3F3AP84243 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
H3F3AP84243 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
H3F3AP84243 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20■□□□□ 0.79
H3F3AP84243 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20■□□□□ 0.79
H3F3AP84243 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
H3F3AP84243 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20■□□□□ 0.79
H3F3AP84243 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
H3F3AP84243 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
H3F3AP84243 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
H3F3AP84243 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
H3F3AP84243 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20■□□□□ 0.79
H3F3AP84243 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20■□□□□ 0.79
H3F3AP84243 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20■□□□□ 0.79
H3F3AP84243 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20■□□□□ 0.79
H3F3AP84243 AC241377.3-202ENST00000626088 1088 ntBASIC20■□□□□ 0.79
H3F3AP84243 AC241585.3-202ENST00000628937 1088 ntBASIC20■□□□□ 0.79
H3F3AP84243 AC245100.8-202ENST00000629247 1058 ntBASIC20■□□□□ 0.79
H3F3AP84243 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
H3F3AP84243 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
H3F3AP84243 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20■□□□□ 0.79
H3F3AP84243 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20■□□□□ 0.79
H3F3AP84243 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20■□□□□ 0.79
H3F3AP84243 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
H3F3AP84243 NFE2L3P1-201ENST00000588207 1959 ntBASIC19.99■□□□□ 0.79
H3F3AP84243 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
H3F3AP84243 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
H3F3AP84243 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
H3F3AP84243 SRD5A1P1-201ENST00000442297 786 ntBASIC19.99■□□□□ 0.79
H3F3AP84243 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC19.99■□□□□ 0.79
H3F3AP84243 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
H3F3AP84243 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC19.99■□□□□ 0.79
H3F3AP84243 RARA-203ENST00000394086 2008 ntTSL 2 BASIC19.98■□□□□ 0.79
H3F3AP84243 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
H3F3AP84243 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC19.98■□□□□ 0.79
H3F3AP84243 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
H3F3AP84243 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
H3F3AP84243 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC19.98■□□□□ 0.79
H3F3AP84243 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
H3F3AP84243 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC19.98■□□□□ 0.79
H3F3AP84243 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
H3F3AP84243 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
H3F3AP84243 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.98■□□□□ 0.79
H3F3AP84243 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
H3F3AP84243 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC19.98■□□□□ 0.79
H3F3AP84243 CASK-201ENST00000378154 2494 ntTSL 5 BASIC19.97■□□□□ 0.79
H3F3AP84243 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
H3F3AP84243 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC19.97■□□□□ 0.79
H3F3AP84243 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
H3F3AP84243 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC19.97■□□□□ 0.79
H3F3AP84243 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
H3F3AP84243 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms