Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
YBX1P67809 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
YBX1P67809 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
YBX1P67809 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
YBX1P67809 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.89■■□□□ 1.1
YBX1P67809 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
YBX1P67809 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
YBX1P67809 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
YBX1P67809 AC005703.6-201ENST00000623265 1329 ntBASIC21.89■■□□□ 1.1
YBX1P67809 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC21.89■■□□□ 1.09
YBX1P67809 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
YBX1P67809 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
YBX1P67809 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC21.89■■□□□ 1.09
YBX1P67809 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC21.89■■□□□ 1.09
YBX1P67809 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.89■■□□□ 1.09
YBX1P67809 AC131212.1-201ENST00000613771 668 ntBASIC21.89■■□□□ 1.09
YBX1P67809 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.89■■□□□ 1.09
YBX1P67809 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
YBX1P67809 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
YBX1P67809 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
YBX1P67809 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.89■■□□□ 1.09
YBX1P67809 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
YBX1P67809 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
YBX1P67809 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.88■■□□□ 1.09
YBX1P67809 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.88■■□□□ 1.09
YBX1P67809 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC21.88■■□□□ 1.09
YBX1P67809 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC21.88■■□□□ 1.09
YBX1P67809 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.88■■□□□ 1.09
YBX1P67809 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.88■■□□□ 1.09
YBX1P67809 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
YBX1P67809 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
YBX1P67809 CLDN5-201ENST00000403084 2357 ntBASIC21.88■■□□□ 1.09
YBX1P67809 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
YBX1P67809 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.88■■□□□ 1.09
YBX1P67809 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
YBX1P67809 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.87■■□□□ 1.09
YBX1P67809 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
YBX1P67809 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
YBX1P67809 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.87■■□□□ 1.09
YBX1P67809 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
YBX1P67809 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
YBX1P67809 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
YBX1P67809 EP400NL-214ENST00000641289 2402 ntBASIC21.87■■□□□ 1.09
YBX1P67809 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
YBX1P67809 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
YBX1P67809 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
YBX1P67809 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
YBX1P67809 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
YBX1P67809 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
YBX1P67809 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
YBX1P67809 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
YBX1P67809 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
YBX1P67809 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
YBX1P67809 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
YBX1P67809 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
YBX1P67809 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
YBX1P67809 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
YBX1P67809 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.86■■□□□ 1.09
YBX1P67809 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
YBX1P67809 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
YBX1P67809 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
YBX1P67809 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
YBX1P67809 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.85■■□□□ 1.09
YBX1P67809 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
YBX1P67809 MIR3621-201ENST00000580529 85 ntBASIC21.85■■□□□ 1.09
YBX1P67809 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.85■■□□□ 1.09
YBX1P67809 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
YBX1P67809 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.85■■□□□ 1.09
YBX1P67809 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
YBX1P67809 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
YBX1P67809 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
YBX1P67809 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
YBX1P67809 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
YBX1P67809 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
YBX1P67809 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
YBX1P67809 AK3-203ENST00000447596 705 ntTSL 2 BASIC21.84■■□□□ 1.09
YBX1P67809 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.84■■□□□ 1.09
YBX1P67809 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
YBX1P67809 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
YBX1P67809 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.84■■□□□ 1.09
YBX1P67809 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.84■■□□□ 1.09
YBX1P67809 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.84■■□□□ 1.09
YBX1P67809 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
YBX1P67809 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
YBX1P67809 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
YBX1P67809 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.83■■□□□ 1.09
YBX1P67809 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
YBX1P67809 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.83■■□□□ 1.09
YBX1P67809 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.83■■□□□ 1.09
YBX1P67809 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC21.83■■□□□ 1.09
YBX1P67809 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.83■■□□□ 1.09
YBX1P67809 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.83■■□□□ 1.08
YBX1P67809 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.83■■□□□ 1.08
YBX1P67809 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
YBX1P67809 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
YBX1P67809 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.82■■□□□ 1.08
YBX1P67809 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
YBX1P67809 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
YBX1P67809 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.82■■□□□ 1.08
YBX1P67809 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21.82■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms