Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLRN1P58418 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
CLRN1P58418 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC19.97■□□□□ 0.79
CLRN1P58418 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
CLRN1P58418 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLRN1P58418 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLRN1P58418 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CLRN1P58418 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CLRN1P58418 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
CLRN1P58418 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLRN1P58418 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC19.96■□□□□ 0.79
CLRN1P58418 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLRN1P58418 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLRN1P58418 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CLRN1P58418 HES6-204ENST00000409182 863 ntTSL 2 BASIC19.96■□□□□ 0.79
CLRN1P58418 CREM-229ENST00000474362 1030 ntTSL 2 BASIC19.96■□□□□ 0.79
CLRN1P58418 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLRN1P58418 ME2-208ENST00000638937 2471 ntTSL 5 BASIC19.96■□□□□ 0.79
CLRN1P58418 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.79
CLRN1P58418 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.79
CLRN1P58418 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.79
CLRN1P58418 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLRN1P58418 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CLRN1P58418 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLRN1P58418 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CLRN1P58418 TFPT-201ENST00000391757 774 ntTSL 5 BASIC19.95■□□□□ 0.78
CLRN1P58418 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLRN1P58418 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC19.95■□□□□ 0.78
CLRN1P58418 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLRN1P58418 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLRN1P58418 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
CLRN1P58418 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLRN1P58418 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLRN1P58418 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CLRN1P58418 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CLRN1P58418 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
CLRN1P58418 UNC93B8-201ENST00000511903 705 ntBASIC19.94■□□□□ 0.78
CLRN1P58418 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
CLRN1P58418 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC19.94■□□□□ 0.78
CLRN1P58418 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CLRN1P58418 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
CLRN1P58418 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLRN1P58418 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLRN1P58418 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CLRN1P58418 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC19.93■□□□□ 0.78
CLRN1P58418 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLRN1P58418 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
CLRN1P58418 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC19.93■□□□□ 0.78
CLRN1P58418 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CLRN1P58418 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC19.93■□□□□ 0.78
CLRN1P58418 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
CLRN1P58418 C9orf163-202ENST00000624034 2573 ntBASIC19.93■□□□□ 0.78
CLRN1P58418 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC19.93■□□□□ 0.78
CLRN1P58418 AC068473.5-201ENST00000616428 2072 ntBASIC19.93■□□□□ 0.78
CLRN1P58418 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLRN1P58418 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC19.92■□□□□ 0.78
CLRN1P58418 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLRN1P58418 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLRN1P58418 LSM4-201ENST00000252816 986 ntTSL 2 BASIC19.92■□□□□ 0.78
CLRN1P58418 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC19.92■□□□□ 0.78
CLRN1P58418 KRT16P3-201ENST00000439127 1283 ntBASIC19.92■□□□□ 0.78
CLRN1P58418 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
CLRN1P58418 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC19.92■□□□□ 0.78
CLRN1P58418 TRIR-205ENST00000592273 783 ntTSL 3 BASIC19.92■□□□□ 0.78
CLRN1P58418 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CLRN1P58418 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLRN1P58418 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLRN1P58418 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC19.92■□□□□ 0.78
CLRN1P58418 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLRN1P58418 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLRN1P58418 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLRN1P58418 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLRN1P58418 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLRN1P58418 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC19.91■□□□□ 0.78
CLRN1P58418 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC19.91■□□□□ 0.78
CLRN1P58418 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC19.91■□□□□ 0.78
CLRN1P58418 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
CLRN1P58418 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC19.91■□□□□ 0.78
CLRN1P58418 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CLRN1P58418 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC19.91■□□□□ 0.78
CLRN1P58418 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLRN1P58418 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLRN1P58418 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.9■□□□□ 0.78
CLRN1P58418 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC19.9■□□□□ 0.78
CLRN1P58418 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CLRN1P58418 MIR6724-1-201ENST00000616420 92 ntBASIC19.9■□□□□ 0.78
CLRN1P58418 MIR6724-2-201ENST00000616483 92 ntBASIC19.9■□□□□ 0.78
CLRN1P58418 MIR6724-4-201ENST00000617390 92 ntBASIC19.9■□□□□ 0.78
CLRN1P58418 MIR6724-3-201ENST00000622482 92 ntBASIC19.9■□□□□ 0.78
CLRN1P58418 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
CLRN1P58418 AC144652.1-201ENST00000609974 1624 ntBASIC19.9■□□□□ 0.78
CLRN1P58418 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CLRN1P58418 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC19.9■□□□□ 0.78
CLRN1P58418 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLRN1P58418 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CLRN1P58418 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC19.89■□□□□ 0.77
CLRN1P58418 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLRN1P58418 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC19.89■□□□□ 0.77
CLRN1P58418 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
CLRN1P58418 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms