Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 MTURN-203ENST00000409688 843 ntTSL 2 BASIC24.72■■□□□ 1.55
PEX3P56589 AC096631.2-201ENST00000436136 790 ntBASIC24.72■■□□□ 1.55
PEX3P56589 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC24.72■■□□□ 1.55
PEX3P56589 AC009086.3-201ENST00000623486 1008 ntBASIC24.72■■□□□ 1.55
PEX3P56589 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC24.72■■□□□ 1.55
PEX3P56589 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC24.71■■□□□ 1.55
PEX3P56589 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
PEX3P56589 FP325331.1-202ENST00000623531 1380 ntBASIC24.71■■□□□ 1.55
PEX3P56589 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
PEX3P56589 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
PEX3P56589 AC092171.4-201ENST00000609130 632 ntBASIC24.71■■□□□ 1.55
PEX3P56589 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
PEX3P56589 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC24.71■■□□□ 1.55
PEX3P56589 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC24.71■■□□□ 1.55
PEX3P56589 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC24.71■■□□□ 1.55
PEX3P56589 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC24.71■■□□□ 1.55
PEX3P56589 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC24.71■■□□□ 1.55
PEX3P56589 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
PEX3P56589 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC24.7■■□□□ 1.55
PEX3P56589 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC24.7■■□□□ 1.54
PEX3P56589 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
PEX3P56589 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC24.7■■□□□ 1.54
PEX3P56589 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
PEX3P56589 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC24.69■■□□□ 1.54
PEX3P56589 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC24.69■■□□□ 1.54
PEX3P56589 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
PEX3P56589 UNC93B3-201ENST00000308076 687 ntBASIC24.69■■□□□ 1.54
PEX3P56589 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC24.69■■□□□ 1.54
PEX3P56589 NALT1-201ENST00000429224 738 ntTSL 5 BASIC24.69■■□□□ 1.54
PEX3P56589 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC24.69■■□□□ 1.54
PEX3P56589 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC24.69■■□□□ 1.54
PEX3P56589 LINC01529-204ENST00000636474 1715 ntBASIC24.69■■□□□ 1.54
PEX3P56589 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
PEX3P56589 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
PEX3P56589 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
PEX3P56589 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
PEX3P56589 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC24.68■■□□□ 1.54
PEX3P56589 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
PEX3P56589 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC24.68■■□□□ 1.54
PEX3P56589 DUX4L19-201ENST00000557448 1267 ntBASIC24.68■■□□□ 1.54
PEX3P56589 AC110285.6-201ENST00000617652 491 ntBASIC24.68■■□□□ 1.54
PEX3P56589 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
PEX3P56589 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC24.68■■□□□ 1.54
PEX3P56589 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
PEX3P56589 SYT6-210ENST00000641643 1587 ntBASIC24.67■■□□□ 1.54
PEX3P56589 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC24.67■■□□□ 1.54
PEX3P56589 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PEX3P56589 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
PEX3P56589 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC24.67■■□□□ 1.54
PEX3P56589 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PEX3P56589 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
PEX3P56589 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
PEX3P56589 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC24.67■■□□□ 1.54
PEX3P56589 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
PEX3P56589 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
PEX3P56589 AL353803.4-201ENST00000565882 1934 ntBASIC24.67■■□□□ 1.54
PEX3P56589 AC092068.2-201ENST00000590491 1708 ntBASIC24.66■■□□□ 1.54
PEX3P56589 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
PEX3P56589 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
PEX3P56589 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
PEX3P56589 SERBP1P1-201ENST00000396021 1160 ntBASIC24.66■■□□□ 1.54
PEX3P56589 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
PEX3P56589 DUX4L4-201ENST00000566884 1269 ntBASIC24.66■■□□□ 1.54
PEX3P56589 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC24.66■■□□□ 1.54
PEX3P56589 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
PEX3P56589 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
PEX3P56589 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC24.66■■□□□ 1.54
PEX3P56589 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
PEX3P56589 GTSE1-AS1-202ENST00000623117 1518 ntBASIC24.66■■□□□ 1.54
PEX3P56589 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
PEX3P56589 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
PEX3P56589 PTCHD3P2-201ENST00000424937 1205 ntBASIC24.65■■□□□ 1.54
PEX3P56589 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC24.65■■□□□ 1.54
PEX3P56589 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
PEX3P56589 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
PEX3P56589 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC24.65■■□□□ 1.54
PEX3P56589 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC24.65■■□□□ 1.54
PEX3P56589 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC24.65■■□□□ 1.54
PEX3P56589 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
PEX3P56589 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC24.64■■□□□ 1.54
PEX3P56589 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC24.64■■□□□ 1.54
PEX3P56589 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
PEX3P56589 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
PEX3P56589 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
PEX3P56589 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
PEX3P56589 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
PEX3P56589 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC24.64■■□□□ 1.54
PEX3P56589 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.54
PEX3P56589 MIR3181-201ENST00000578512 73 ntBASIC24.64■■□□□ 1.54
PEX3P56589 AL136162.1-201ENST00000607711 1078 ntBASIC24.64■■□□□ 1.54
PEX3P56589 pRNA.6-201ENST00000610482 90 ntBASIC24.64■■□□□ 1.54
PEX3P56589 pRNA.5-201ENST00000612139 90 ntBASIC24.64■■□□□ 1.54
PEX3P56589 pRNA.11-201ENST00000618423 90 ntBASIC24.64■■□□□ 1.54
PEX3P56589 pRNA.13-201ENST00000619112 90 ntBASIC24.64■■□□□ 1.54
PEX3P56589 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
PEX3P56589 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC24.64■■□□□ 1.53
PEX3P56589 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
PEX3P56589 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC24.64■■□□□ 1.53
PEX3P56589 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC24.64■■□□□ 1.53
PEX3P56589 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC24.64■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms