Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AGPS-202ENST00000409888 815 ntTSL 4 BASIC16.76■□□□□ 0.27
FOXA3P55318 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA3P55318 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA3P55318 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC16.76■□□□□ 0.27
FOXA3P55318 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA3P55318 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA3P55318 COMT-203ENST00000403184 2217 ntTSL 2 BASIC16.76■□□□□ 0.27
FOXA3P55318 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA3P55318 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA3P55318 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA3P55318 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
FOXA3P55318 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC16.75■□□□□ 0.27
FOXA3P55318 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA3P55318 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA3P55318 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA3P55318 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA3P55318 BID-212ENST00000614949 1988 ntTSL 5 BASIC16.75■□□□□ 0.27
FOXA3P55318 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
FOXA3P55318 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
FOXA3P55318 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
FOXA3P55318 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
FOXA3P55318 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC16.74■□□□□ 0.27
FOXA3P55318 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
FOXA3P55318 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
FOXA3P55318 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
FOXA3P55318 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
FOXA3P55318 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
FOXA3P55318 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
FOXA3P55318 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA3P55318 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA3P55318 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA3P55318 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA3P55318 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
FOXA3P55318 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
FOXA3P55318 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA3P55318 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
FOXA3P55318 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
FOXA3P55318 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA3P55318 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA3P55318 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC16.73■□□□□ 0.27
FOXA3P55318 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
FOXA3P55318 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA3P55318 MOB2-207ENST00000614710 705 ntTSL 5 BASIC16.73■□□□□ 0.27
FOXA3P55318 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA3P55318 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA3P55318 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA3P55318 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA3P55318 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC16.73■□□□□ 0.27
FOXA3P55318 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA3P55318 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC16.72■□□□□ 0.27
FOXA3P55318 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA3P55318 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC16.72■□□□□ 0.27
FOXA3P55318 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA3P55318 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA3P55318 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA3P55318 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC16.72■□□□□ 0.27
FOXA3P55318 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA3P55318 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC16.72■□□□□ 0.27
FOXA3P55318 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC16.72■□□□□ 0.27
FOXA3P55318 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC16.72■□□□□ 0.27
FOXA3P55318 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
FOXA3P55318 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC16.72■□□□□ 0.27
FOXA3P55318 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA3P55318 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA3P55318 C11orf96-202ENST00000528572 1834 ntBASIC16.72■□□□□ 0.27
FOXA3P55318 AC092053.2-201ENST00000640557 1818 ntBASIC16.72■□□□□ 0.27
FOXA3P55318 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA3P55318 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
FOXA3P55318 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA3P55318 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
FOXA3P55318 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA3P55318 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA3P55318 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
FOXA3P55318 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA3P55318 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
FOXA3P55318 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
FOXA3P55318 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
FOXA3P55318 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC16.71■□□□□ 0.27
FOXA3P55318 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC16.71■□□□□ 0.27
FOXA3P55318 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC16.71■□□□□ 0.27
FOXA3P55318 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
FOXA3P55318 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
FOXA3P55318 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
FOXA3P55318 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
FOXA3P55318 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
FOXA3P55318 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
FOXA3P55318 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
FOXA3P55318 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC16.71■□□□□ 0.27
FOXA3P55318 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
FOXA3P55318 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC16.71■□□□□ 0.26
FOXA3P55318 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
FOXA3P55318 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC16.7■□□□□ 0.26
FOXA3P55318 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
FOXA3P55318 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA3P55318 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC16.7■□□□□ 0.26
FOXA3P55318 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC16.7■□□□□ 0.26
FOXA3P55318 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA3P55318 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA3P55318 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA3P55318 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms