Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
CTCFP49711 GTSE1-AS1-202ENST00000623117 1518 ntBASIC26.2■■□□□ 1.79
CTCFP49711 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
CTCFP49711 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC26.2■■□□□ 1.78
CTCFP49711 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
CTCFP49711 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
CTCFP49711 DUX4L4-201ENST00000566884 1269 ntBASIC26.2■■□□□ 1.78
CTCFP49711 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC26.2■■□□□ 1.78
CTCFP49711 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC26.19■■□□□ 1.78
CTCFP49711 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CTCFP49711 PRORSD1P-201ENST00000295112 541 ntBASIC26.19■■□□□ 1.78
CTCFP49711 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
CTCFP49711 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CTCFP49711 KRT19P1-201ENST00000405746 1186 ntBASIC26.19■■□□□ 1.78
CTCFP49711 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC26.19■■□□□ 1.78
CTCFP49711 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC26.19■■□□□ 1.78
CTCFP49711 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC26.19■■□□□ 1.78
CTCFP49711 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC26.19■■□□□ 1.78
CTCFP49711 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC26.19■■□□□ 1.78
CTCFP49711 AC004854.2-201ENST00000608450 1441 ntBASIC26.19■■□□□ 1.78
CTCFP49711 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC26.19■■□□□ 1.78
CTCFP49711 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
CTCFP49711 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
CTCFP49711 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CTCFP49711 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC26.18■■□□□ 1.78
CTCFP49711 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CTCFP49711 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC26.18■■□□□ 1.78
CTCFP49711 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC26.18■■□□□ 1.78
CTCFP49711 GUSBP6-202ENST00000438529 1198 ntBASIC26.18■■□□□ 1.78
CTCFP49711 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CTCFP49711 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC26.18■■□□□ 1.78
CTCFP49711 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC26.18■■□□□ 1.78
CTCFP49711 NKILA-201ENST00000613231 537 ntTSL 4 BASIC26.18■■□□□ 1.78
CTCFP49711 TFG-210ENST00000620299 1289 ntTSL 5 BASIC26.18■■□□□ 1.78
CTCFP49711 PFKL-212ENST00000628044 129 ntTSL 3 BASIC26.18■■□□□ 1.78
CTCFP49711 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
CTCFP49711 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CTCFP49711 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CTCFP49711 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
CTCFP49711 AC091060.1-201ENST00000623524 1766 ntBASIC26.18■■□□□ 1.78
CTCFP49711 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC26.17■■□□□ 1.78
CTCFP49711 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC26.17■■□□□ 1.78
CTCFP49711 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC26.17■■□□□ 1.78
CTCFP49711 RPS2P52-201ENST00000469610 820 ntBASIC26.17■■□□□ 1.78
CTCFP49711 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC26.17■■□□□ 1.78
CTCFP49711 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC26.17■■□□□ 1.78
CTCFP49711 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC26.17■■□□□ 1.78
CTCFP49711 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
CTCFP49711 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
CTCFP49711 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
CTCFP49711 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC26.17■■□□□ 1.78
CTCFP49711 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CTCFP49711 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.78
CTCFP49711 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
CTCFP49711 AL050303.2-201ENST00000619798 666 ntBASIC26.16■■□□□ 1.78
CTCFP49711 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
CTCFP49711 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CTCFP49711 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC26.16■■□□□ 1.78
CTCFP49711 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC26.16■■□□□ 1.78
CTCFP49711 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC26.15■■□□□ 1.78
CTCFP49711 LINC01003-201ENST00000564834 1764 ntBASIC26.15■■□□□ 1.78
CTCFP49711 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CTCFP49711 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CTCFP49711 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CTCFP49711 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC26.15■■□□□ 1.78
CTCFP49711 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC26.15■■□□□ 1.78
CTCFP49711 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CTCFP49711 SLC29A4P1-201ENST00000398760 971 ntBASIC26.15■■□□□ 1.78
CTCFP49711 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC26.15■■□□□ 1.78
CTCFP49711 STK32C-205ENST00000456004 607 ntTSL 2 BASIC26.15■■□□□ 1.78
CTCFP49711 RHEB-204ENST00000472642 900 ntTSL 3 BASIC26.15■■□□□ 1.78
CTCFP49711 SPI1-203ENST00000533030 661 ntTSL 2 BASIC26.15■■□□□ 1.78
CTCFP49711 SLC7A5P2-201ENST00000553010 536 ntBASIC26.15■■□□□ 1.78
CTCFP49711 AC105233.4-201ENST00000642045 216 ntBASIC26.15■■□□□ 1.78
CTCFP49711 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
CTCFP49711 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
CTCFP49711 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC26.14■■□□□ 1.78
CTCFP49711 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.78
CTCFP49711 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
CTCFP49711 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
CTCFP49711 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC26.14■■□□□ 1.78
CTCFP49711 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC26.14■■□□□ 1.78
CTCFP49711 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
CTCFP49711 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.78
CTCFP49711 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
CTCFP49711 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC26.14■■□□□ 1.78
CTCFP49711 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC26.14■■□□□ 1.77
CTCFP49711 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
CTCFP49711 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.77
CTCFP49711 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
CTCFP49711 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC26.14■■□□□ 1.77
CTCFP49711 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC26.14■■□□□ 1.77
CTCFP49711 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
CTCFP49711 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
CTCFP49711 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC26.13■■□□□ 1.77
CTCFP49711 MIR1224-201ENST00000408193 85 ntBASIC26.13■■□□□ 1.77
CTCFP49711 AL596275.1-201ENST00000423464 877 ntBASIC26.13■■□□□ 1.77
CTCFP49711 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
CTCFP49711 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC26.13■■□□□ 1.77
CTCFP49711 AC133041.1-202ENST00000642053 222 ntBASIC26.13■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms