Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CXCL12P48061 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CXCL12P48061 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CXCL12P48061 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CXCL12P48061 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CXCL12P48061 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CXCL12P48061 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CXCL12P48061 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC22.59■■□□□ 1.21
CXCL12P48061 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC22.59■■□□□ 1.21
CXCL12P48061 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC22.59■■□□□ 1.21
CXCL12P48061 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC22.59■■□□□ 1.21
CXCL12P48061 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
CXCL12P48061 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CXCL12P48061 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC22.59■■□□□ 1.21
CXCL12P48061 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
CXCL12P48061 HLA-L-211ENST00000482052 1765 ntBASIC22.58■■□□□ 1.21
CXCL12P48061 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CXCL12P48061 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC22.58■■□□□ 1.21
CXCL12P48061 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.21
CXCL12P48061 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
CXCL12P48061 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC22.58■■□□□ 1.21
CXCL12P48061 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CXCL12P48061 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC22.58■■□□□ 1.2
CXCL12P48061 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC22.58■■□□□ 1.2
CXCL12P48061 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CXCL12P48061 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC22.57■■□□□ 1.2
CXCL12P48061 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CXCL12P48061 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CXCL12P48061 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CXCL12P48061 AP005435.1-201ENST00000529293 1178 ntBASIC22.57■■□□□ 1.2
CXCL12P48061 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CXCL12P48061 AC105233.4-201ENST00000642045 216 ntBASIC22.57■■□□□ 1.2
CXCL12P48061 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC22.57■■□□□ 1.2
CXCL12P48061 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC22.57■■□□□ 1.2
CXCL12P48061 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CXCL12P48061 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CXCL12P48061 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC22.56■■□□□ 1.2
CXCL12P48061 AC016769.1-201ENST00000409132 1010 ntBASIC22.56■■□□□ 1.2
CXCL12P48061 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC22.56■■□□□ 1.2
CXCL12P48061 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CXCL12P48061 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CXCL12P48061 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CXCL12P48061 EI24-204ENST00000527235 1625 ntTSL 5 BASIC22.56■■□□□ 1.2
CXCL12P48061 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CXCL12P48061 AC006015.1-201ENST00000429970 570 ntBASIC22.55■■□□□ 1.2
CXCL12P48061 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
CXCL12P48061 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
CXCL12P48061 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CXCL12P48061 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
CXCL12P48061 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CXCL12P48061 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CXCL12P48061 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CXCL12P48061 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC22.54■■□□□ 1.2
CXCL12P48061 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC22.54■■□□□ 1.2
CXCL12P48061 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
CXCL12P48061 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC22.54■■□□□ 1.2
CXCL12P48061 GXYLT1P5-201ENST00000614548 1189 ntBASIC22.54■■□□□ 1.2
CXCL12P48061 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CXCL12P48061 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC22.54■■□□□ 1.2
CXCL12P48061 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC22.54■■□□□ 1.2
CXCL12P48061 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC22.54■■□□□ 1.2
CXCL12P48061 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CXCL12P48061 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC22.53■■□□□ 1.2
CXCL12P48061 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
CXCL12P48061 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC22.53■■□□□ 1.2
CXCL12P48061 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
CXCL12P48061 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC22.53■■□□□ 1.2
CXCL12P48061 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
CXCL12P48061 AC137761.2-201ENST00000561729 223 ntBASIC22.53■■□□□ 1.2
CXCL12P48061 AC145350.3-201ENST00000569033 163 ntBASIC22.53■■□□□ 1.2
CXCL12P48061 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC22.53■■□□□ 1.2
CXCL12P48061 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CXCL12P48061 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC22.53■■□□□ 1.2
CXCL12P48061 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
CXCL12P48061 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
CXCL12P48061 FP325331.1-202ENST00000623531 1380 ntBASIC22.52■■□□□ 1.2
CXCL12P48061 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CXCL12P48061 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
CXCL12P48061 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
CXCL12P48061 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
CXCL12P48061 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC22.52■■□□□ 1.2
CXCL12P48061 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC22.52■■□□□ 1.2
CXCL12P48061 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC22.52■■□□□ 1.2
CXCL12P48061 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC22.52■■□□□ 1.2
CXCL12P48061 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC22.52■■□□□ 1.2
CXCL12P48061 DUSP8P4-201ENST00000399538 1761 ntBASIC22.52■■□□□ 1.2
CXCL12P48061 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CXCL12P48061 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CXCL12P48061 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC22.52■■□□□ 1.2
CXCL12P48061 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
CXCL12P48061 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CXCL12P48061 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CXCL12P48061 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CXCL12P48061 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC22.51■■□□□ 1.19
CXCL12P48061 CDCA4P2-201ENST00000441182 718 ntBASIC22.51■■□□□ 1.19
CXCL12P48061 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC22.51■■□□□ 1.19
CXCL12P48061 GALNS-213ENST00000569433 723 ntTSL 3 BASIC22.51■■□□□ 1.19
CXCL12P48061 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CXCL12P48061 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CXCL12P48061 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC22.51■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms