Protein–RNA interactions for Protein: P29353

SHC1, SHC-transforming protein 1, humanhuman

Predictions only

Length 583 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHC1P29353 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHC1P29353 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHC1P29353 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
SHC1P29353 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.46■□□□□ 0.87
SHC1P29353 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SHC1P29353 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.46■□□□□ 0.87
SHC1P29353 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.46■□□□□ 0.87
SHC1P29353 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.46■□□□□ 0.87
SHC1P29353 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
SHC1P29353 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHC1P29353 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHC1P29353 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
SHC1P29353 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHC1P29353 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SHC1P29353 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHC1P29353 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
SHC1P29353 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.45■□□□□ 0.86
SHC1P29353 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
SHC1P29353 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
SHC1P29353 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.45■□□□□ 0.86
SHC1P29353 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SHC1P29353 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHC1P29353 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHC1P29353 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SHC1P29353 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SHC1P29353 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHC1P29353 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SHC1P29353 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHC1P29353 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHC1P29353 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SHC1P29353 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.44■□□□□ 0.86
SHC1P29353 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.44■□□□□ 0.86
SHC1P29353 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHC1P29353 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.44■□□□□ 0.86
SHC1P29353 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.44■□□□□ 0.86
SHC1P29353 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.44■□□□□ 0.86
SHC1P29353 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.44■□□□□ 0.86
SHC1P29353 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.44■□□□□ 0.86
SHC1P29353 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
SHC1P29353 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
SHC1P29353 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SHC1P29353 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHC1P29353 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHC1P29353 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHC1P29353 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHC1P29353 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
SHC1P29353 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.44■□□□□ 0.86
SHC1P29353 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
SHC1P29353 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHC1P29353 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
SHC1P29353 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
SHC1P29353 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
SHC1P29353 MIR3621-201ENST00000580529 85 ntBASIC20.43■□□□□ 0.86
SHC1P29353 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
SHC1P29353 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.43■□□□□ 0.86
SHC1P29353 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.43■□□□□ 0.86
SHC1P29353 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.43■□□□□ 0.86
SHC1P29353 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
SHC1P29353 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHC1P29353 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHC1P29353 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SHC1P29353 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.42■□□□□ 0.86
SHC1P29353 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHC1P29353 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
SHC1P29353 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.42■□□□□ 0.86
SHC1P29353 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.42■□□□□ 0.86
SHC1P29353 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHC1P29353 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHC1P29353 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.42■□□□□ 0.86
SHC1P29353 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.42■□□□□ 0.86
SHC1P29353 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHC1P29353 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.42■□□□□ 0.86
SHC1P29353 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
SHC1P29353 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHC1P29353 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC20.42■□□□□ 0.86
SHC1P29353 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
SHC1P29353 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHC1P29353 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHC1P29353 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHC1P29353 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
SHC1P29353 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHC1P29353 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SHC1P29353 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SHC1P29353 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.41■□□□□ 0.86
SHC1P29353 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.41■□□□□ 0.86
SHC1P29353 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
SHC1P29353 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHC1P29353 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SHC1P29353 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.41■□□□□ 0.86
SHC1P29353 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHC1P29353 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SHC1P29353 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
SHC1P29353 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHC1P29353 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
SHC1P29353 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHC1P29353 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHC1P29353 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHC1P29353 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.4■□□□□ 0.86
SHC1P29353 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.4■□□□□ 0.86
SHC1P29353 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms