Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
HLA-DQB2P05538 C9orf163-202ENST00000624034 2573 ntBASIC22.79■■□□□ 1.24
HLA-DQB2P05538 AL353803.4-201ENST00000565882 1934 ntBASIC22.78■■□□□ 1.24
HLA-DQB2P05538 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC22.78■■□□□ 1.24
HLA-DQB2P05538 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC22.78■■□□□ 1.24
HLA-DQB2P05538 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC22.78■■□□□ 1.24
HLA-DQB2P05538 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
HLA-DQB2P05538 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
HLA-DQB2P05538 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC22.78■■□□□ 1.24
HLA-DQB2P05538 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC22.78■■□□□ 1.24
HLA-DQB2P05538 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
HLA-DQB2P05538 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC22.78■■□□□ 1.24
HLA-DQB2P05538 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC22.77■■□□□ 1.24
HLA-DQB2P05538 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
HLA-DQB2P05538 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
HLA-DQB2P05538 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC22.77■■□□□ 1.24
HLA-DQB2P05538 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC22.77■■□□□ 1.24
HLA-DQB2P05538 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC22.77■■□□□ 1.24
HLA-DQB2P05538 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC22.77■■□□□ 1.24
HLA-DQB2P05538 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC22.77■■□□□ 1.24
HLA-DQB2P05538 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
HLA-DQB2P05538 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC22.77■■□□□ 1.23
HLA-DQB2P05538 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC22.76■■□□□ 1.23
HLA-DQB2P05538 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
HLA-DQB2P05538 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
HLA-DQB2P05538 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC22.76■■□□□ 1.23
HLA-DQB2P05538 QDPR-206ENST00000508623 601 ntTSL 3 BASIC22.76■■□□□ 1.23
HLA-DQB2P05538 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
HLA-DQB2P05538 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
HLA-DQB2P05538 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC22.76■■□□□ 1.23
HLA-DQB2P05538 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
HLA-DQB2P05538 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC22.75■■□□□ 1.23
HLA-DQB2P05538 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC22.75■■□□□ 1.23
HLA-DQB2P05538 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
HLA-DQB2P05538 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
HLA-DQB2P05538 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
HLA-DQB2P05538 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC22.75■■□□□ 1.23
HLA-DQB2P05538 SRR-208ENST00000576848 588 ntTSL 4 BASIC22.75■■□□□ 1.23
HLA-DQB2P05538 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC22.75■■□□□ 1.23
HLA-DQB2P05538 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC22.75■■□□□ 1.23
HLA-DQB2P05538 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC22.75■■□□□ 1.23
HLA-DQB2P05538 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
HLA-DQB2P05538 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC22.74■■□□□ 1.23
HLA-DQB2P05538 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
HLA-DQB2P05538 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC22.74■■□□□ 1.23
HLA-DQB2P05538 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
HLA-DQB2P05538 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
HLA-DQB2P05538 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC22.74■■□□□ 1.23
HLA-DQB2P05538 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC22.74■■□□□ 1.23
HLA-DQB2P05538 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC22.74■■□□□ 1.23
HLA-DQB2P05538 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC22.74■■□□□ 1.23
HLA-DQB2P05538 TRIR-202ENST00000588213 841 ntTSL 3 BASIC22.74■■□□□ 1.23
HLA-DQB2P05538 AL512631.2-201ENST00000604634 923 ntBASIC22.74■■□□□ 1.23
HLA-DQB2P05538 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
HLA-DQB2P05538 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC22.74■■□□□ 1.23
HLA-DQB2P05538 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
HLA-DQB2P05538 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
HLA-DQB2P05538 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC22.73■■□□□ 1.23
HLA-DQB2P05538 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC22.73■■□□□ 1.23
HLA-DQB2P05538 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC22.73■■□□□ 1.23
HLA-DQB2P05538 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC22.73■■□□□ 1.23
HLA-DQB2P05538 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
HLA-DQB2P05538 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC22.73■■□□□ 1.23
HLA-DQB2P05538 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC22.72■■□□□ 1.23
HLA-DQB2P05538 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
HLA-DQB2P05538 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC22.72■■□□□ 1.23
HLA-DQB2P05538 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
HLA-DQB2P05538 RPP21-222ENST00000433076 577 ntTSL 2 BASIC22.72■■□□□ 1.23
HLA-DQB2P05538 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC22.72■■□□□ 1.23
HLA-DQB2P05538 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC22.72■■□□□ 1.23
HLA-DQB2P05538 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC22.72■■□□□ 1.23
HLA-DQB2P05538 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC22.72■■□□□ 1.23
HLA-DQB2P05538 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC22.71■■□□□ 1.23
HLA-DQB2P05538 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
HLA-DQB2P05538 VGF-203ENST00000611537 1622 ntTSL 5 BASIC22.71■■□□□ 1.23
HLA-DQB2P05538 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
HLA-DQB2P05538 LINC01529-204ENST00000636474 1715 ntBASIC22.71■■□□□ 1.23
HLA-DQB2P05538 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.23
HLA-DQB2P05538 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC22.7■■□□□ 1.22
HLA-DQB2P05538 FP325331.1-202ENST00000623531 1380 ntBASIC22.7■■□□□ 1.22
HLA-DQB2P05538 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC22.7■■□□□ 1.22
HLA-DQB2P05538 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC22.7■■□□□ 1.22
HLA-DQB2P05538 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC22.7■■□□□ 1.22
HLA-DQB2P05538 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC22.7■■□□□ 1.22
HLA-DQB2P05538 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC22.7■■□□□ 1.22
HLA-DQB2P05538 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC22.69■■□□□ 1.22
HLA-DQB2P05538 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC22.69■■□□□ 1.22
HLA-DQB2P05538 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC22.69■■□□□ 1.22
HLA-DQB2P05538 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
HLA-DQB2P05538 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC22.69■■□□□ 1.22
HLA-DQB2P05538 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
HLA-DQB2P05538 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC22.69■■□□□ 1.22
HLA-DQB2P05538 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
HLA-DQB2P05538 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
HLA-DQB2P05538 AC068473.5-201ENST00000616428 2072 ntBASIC22.69■■□□□ 1.22
HLA-DQB2P05538 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
HLA-DQB2P05538 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
HLA-DQB2P05538 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
HLA-DQB2P05538 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
HLA-DQB2P05538 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC22.68■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms