Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
CACNA1FO60840 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
CACNA1FO60840 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC28.52■■■□□ 2.16
CACNA1FO60840 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
CACNA1FO60840 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC28.52■■■□□ 2.16
CACNA1FO60840 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC28.52■■■□□ 2.16
CACNA1FO60840 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC28.51■■■□□ 2.15
CACNA1FO60840 HES6-206ENST00000409574 738 ntTSL 2 BASIC28.51■■■□□ 2.15
CACNA1FO60840 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC28.51■■■□□ 2.15
CACNA1FO60840 DUX4L4-201ENST00000566884 1269 ntBASIC28.51■■■□□ 2.15
CACNA1FO60840 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC28.51■■■□□ 2.15
CACNA1FO60840 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC28.51■■■□□ 2.15
CACNA1FO60840 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC28.51■■■□□ 2.15
CACNA1FO60840 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
CACNA1FO60840 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
CACNA1FO60840 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
CACNA1FO60840 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC28.5■■■□□ 2.15
CACNA1FO60840 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC28.5■■■□□ 2.15
CACNA1FO60840 AC136469.2-201ENST00000623944 1028 ntBASIC28.5■■■□□ 2.15
CACNA1FO60840 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC28.5■■■□□ 2.15
CACNA1FO60840 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC28.5■■■□□ 2.15
CACNA1FO60840 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
CACNA1FO60840 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
CACNA1FO60840 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC28.49■■■□□ 2.15
CACNA1FO60840 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC28.49■■■□□ 2.15
CACNA1FO60840 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC28.49■■■□□ 2.15
CACNA1FO60840 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
CACNA1FO60840 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
CACNA1FO60840 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
CACNA1FO60840 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
CACNA1FO60840 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC28.49■■■□□ 2.15
CACNA1FO60840 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC28.48■■■□□ 2.15
CACNA1FO60840 EDA-201ENST00000338901 1233 ntBASIC28.48■■■□□ 2.15
CACNA1FO60840 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC28.48■■■□□ 2.15
CACNA1FO60840 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC28.48■■■□□ 2.15
CACNA1FO60840 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC28.48■■■□□ 2.15
CACNA1FO60840 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
CACNA1FO60840 AP001330.3-201ENST00000520123 633 ntBASIC28.48■■■□□ 2.15
CACNA1FO60840 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC28.48■■■□□ 2.15
CACNA1FO60840 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC28.47■■■□□ 2.15
CACNA1FO60840 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC28.47■■■□□ 2.15
CACNA1FO60840 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
CACNA1FO60840 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC28.47■■■□□ 2.15
CACNA1FO60840 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC28.47■■■□□ 2.15
CACNA1FO60840 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
CACNA1FO60840 AL136162.1-201ENST00000607711 1078 ntBASIC28.47■■■□□ 2.15
CACNA1FO60840 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
CACNA1FO60840 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC28.47■■■□□ 2.15
CACNA1FO60840 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
CACNA1FO60840 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC28.46■■■□□ 2.15
CACNA1FO60840 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC28.46■■■□□ 2.15
CACNA1FO60840 DUSP8P3-201ENST00000399571 1760 ntBASIC28.46■■■□□ 2.15
CACNA1FO60840 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC28.46■■■□□ 2.15
CACNA1FO60840 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
CACNA1FO60840 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
CACNA1FO60840 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
CACNA1FO60840 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC28.45■■■□□ 2.15
CACNA1FO60840 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC28.45■■■□□ 2.15
CACNA1FO60840 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC28.45■■■□□ 2.14
CACNA1FO60840 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC28.45■■■□□ 2.14
CACNA1FO60840 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC28.45■■■□□ 2.14
CACNA1FO60840 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC28.45■■■□□ 2.14
CACNA1FO60840 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
CACNA1FO60840 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
CACNA1FO60840 RALB-208ENST00000631312 311 ntTSL 5 BASIC28.44■■■□□ 2.14
CACNA1FO60840 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC28.44■■■□□ 2.14
CACNA1FO60840 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC28.44■■■□□ 2.14
CACNA1FO60840 ANOS2P-203ENST00000472227 1816 ntBASIC28.44■■■□□ 2.14
CACNA1FO60840 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC28.44■■■□□ 2.14
CACNA1FO60840 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC28.44■■■□□ 2.14
CACNA1FO60840 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC28.44■■■□□ 2.14
CACNA1FO60840 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
CACNA1FO60840 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
CACNA1FO60840 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC28.43■■■□□ 2.14
CACNA1FO60840 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC28.43■■■□□ 2.14
CACNA1FO60840 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
CACNA1FO60840 MIR3181-201ENST00000578512 73 ntBASIC28.43■■■□□ 2.14
CACNA1FO60840 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC28.43■■■□□ 2.14
CACNA1FO60840 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC28.43■■■□□ 2.14
CACNA1FO60840 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
CACNA1FO60840 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
CACNA1FO60840 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC28.43■■■□□ 2.14
CACNA1FO60840 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
CACNA1FO60840 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
CACNA1FO60840 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
CACNA1FO60840 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
CACNA1FO60840 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC28.42■■■□□ 2.14
CACNA1FO60840 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC28.42■■■□□ 2.14
CACNA1FO60840 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC28.42■■■□□ 2.14
CACNA1FO60840 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
CACNA1FO60840 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
CACNA1FO60840 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
CACNA1FO60840 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC28.42■■■□□ 2.14
CACNA1FO60840 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC28.41■■■□□ 2.14
CACNA1FO60840 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
CACNA1FO60840 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC28.41■■■□□ 2.14
CACNA1FO60840 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
CACNA1FO60840 AC133637.1-201ENST00000624115 1537 ntBASIC28.41■■■□□ 2.14
CACNA1FO60840 LINC01529-204ENST00000636474 1715 ntBASIC28.41■■■□□ 2.14
CACNA1FO60840 PBX2P1-201ENST00000493219 1291 ntBASIC28.41■■■□□ 2.14
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms