Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
SDCBPO00560 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
SDCBPO00560 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC18.98■□□□□ 0.63
SDCBPO00560 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SDCBPO00560 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC18.98■□□□□ 0.63
SDCBPO00560 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SDCBPO00560 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SDCBPO00560 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC18.98■□□□□ 0.63
SDCBPO00560 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SDCBPO00560 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SDCBPO00560 AC120024.1-201ENST00000562672 995 ntBASIC18.98■□□□□ 0.63
SDCBPO00560 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC18.98■□□□□ 0.63
SDCBPO00560 THA1P-201ENST00000590384 1145 ntBASIC18.98■□□□□ 0.63
SDCBPO00560 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SDCBPO00560 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SDCBPO00560 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC18.98■□□□□ 0.63
SDCBPO00560 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SDCBPO00560 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SDCBPO00560 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SDCBPO00560 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SDCBPO00560 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SDCBPO00560 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SDCBPO00560 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SDCBPO00560 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
SDCBPO00560 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SDCBPO00560 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC18.97■□□□□ 0.63
SDCBPO00560 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC18.97■□□□□ 0.63
SDCBPO00560 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC18.97■□□□□ 0.63
SDCBPO00560 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SDCBPO00560 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SDCBPO00560 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SDCBPO00560 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SDCBPO00560 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SDCBPO00560 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
SDCBPO00560 AL022069.1-201ENST00000568025 1636 ntBASIC18.96■□□□□ 0.63
SDCBPO00560 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
SDCBPO00560 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SDCBPO00560 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SDCBPO00560 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC18.96■□□□□ 0.63
SDCBPO00560 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
SDCBPO00560 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SDCBPO00560 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SDCBPO00560 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SDCBPO00560 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SDCBPO00560 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SDCBPO00560 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SDCBPO00560 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SDCBPO00560 ECEL1P1-201ENST00000373592 1742 ntBASIC18.95■□□□□ 0.62
SDCBPO00560 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SDCBPO00560 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SDCBPO00560 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC18.95■□□□□ 0.62
SDCBPO00560 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SDCBPO00560 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SDCBPO00560 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SDCBPO00560 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SDCBPO00560 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SDCBPO00560 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SDCBPO00560 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
SDCBPO00560 KRT18P24-201ENST00000344739 1156 ntBASIC18.94■□□□□ 0.62
SDCBPO00560 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC18.94■□□□□ 0.62
SDCBPO00560 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SDCBPO00560 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
SDCBPO00560 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC18.94■□□□□ 0.62
SDCBPO00560 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SDCBPO00560 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
SDCBPO00560 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
SDCBPO00560 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
SDCBPO00560 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC18.94■□□□□ 0.62
SDCBPO00560 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SDCBPO00560 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
SDCBPO00560 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
SDCBPO00560 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SDCBPO00560 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SDCBPO00560 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SDCBPO00560 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
SDCBPO00560 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC18.93■□□□□ 0.62
SDCBPO00560 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC18.93■□□□□ 0.62
SDCBPO00560 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SDCBPO00560 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
SDCBPO00560 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC18.93■□□□□ 0.62
SDCBPO00560 WWC2-AS2-201ENST00000578387 2183 ntBASIC18.93■□□□□ 0.62
SDCBPO00560 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
SDCBPO00560 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SDCBPO00560 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SDCBPO00560 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC18.93■□□□□ 0.62
SDCBPO00560 EI24-204ENST00000527235 1625 ntTSL 5 BASIC18.92■□□□□ 0.62
SDCBPO00560 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SDCBPO00560 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
SDCBPO00560 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SDCBPO00560 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SDCBPO00560 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SDCBPO00560 YBX1P4-201ENST00000392794 808 ntBASIC18.92■□□□□ 0.62
SDCBPO00560 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC18.92■□□□□ 0.62
SDCBPO00560 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC18.92■□□□□ 0.62
SDCBPO00560 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
SDCBPO00560 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC18.92■□□□□ 0.62
SDCBPO00560 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
SDCBPO00560 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SDCBPO00560 EFS-203ENST00000429593 2610 ntTSL 2 BASIC18.92■□□□□ 0.62
SDCBPO00560 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms