Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC17.74■□□□□ 0.43
COL6A5A8TX70 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC17.74■□□□□ 0.43
COL6A5A8TX70 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A5A8TX70 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A5A8TX70 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A5A8TX70 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A5A8TX70 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A5A8TX70 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
COL6A5A8TX70 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC17.73■□□□□ 0.43
COL6A5A8TX70 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A5A8TX70 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC17.73■□□□□ 0.43
COL6A5A8TX70 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A5A8TX70 AF201337.1-201ENST00000520239 748 ntBASIC17.73■□□□□ 0.43
COL6A5A8TX70 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC17.73■□□□□ 0.43
COL6A5A8TX70 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC17.73■□□□□ 0.43
COL6A5A8TX70 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A5A8TX70 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
COL6A5A8TX70 AP004609.3-201ENST00000610705 1884 ntBASIC17.73■□□□□ 0.43
COL6A5A8TX70 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A5A8TX70 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC17.73■□□□□ 0.43
COL6A5A8TX70 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A5A8TX70 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A5A8TX70 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A5A8TX70 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A5A8TX70 FAM210CP-201ENST00000445714 574 ntBASIC17.72■□□□□ 0.43
COL6A5A8TX70 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A5A8TX70 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A5A8TX70 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC17.72■□□□□ 0.43
COL6A5A8TX70 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC17.72■□□□□ 0.43
COL6A5A8TX70 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A5A8TX70 DUSP5P2-201ENST00000426873 1033 ntBASIC17.72■□□□□ 0.43
COL6A5A8TX70 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
COL6A5A8TX70 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A5A8TX70 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC17.72■□□□□ 0.43
COL6A5A8TX70 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A5A8TX70 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC17.71■□□□□ 0.43
COL6A5A8TX70 AC092118.2-201ENST00000613495 667 ntBASIC17.71■□□□□ 0.43
COL6A5A8TX70 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
COL6A5A8TX70 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
COL6A5A8TX70 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A5A8TX70 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A5A8TX70 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A5A8TX70 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A5A8TX70 ECEL1P3-201ENST00000427961 737 ntBASIC17.71■□□□□ 0.43
COL6A5A8TX70 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.71■□□□□ 0.43
COL6A5A8TX70 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC17.71■□□□□ 0.43
COL6A5A8TX70 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
COL6A5A8TX70 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
COL6A5A8TX70 AC139426.1-201ENST00000568218 2529 ntBASIC17.71■□□□□ 0.42
COL6A5A8TX70 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
COL6A5A8TX70 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A5A8TX70 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A5A8TX70 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC17.7■□□□□ 0.42
COL6A5A8TX70 AC007322.1-201ENST00000426983 750 ntBASIC17.7■□□□□ 0.42
COL6A5A8TX70 RPS2P4-201ENST00000476944 856 ntBASIC17.7■□□□□ 0.42
COL6A5A8TX70 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A5A8TX70 AC005181.1-201ENST00000604782 1256 ntBASIC17.7■□□□□ 0.42
COL6A5A8TX70 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A5A8TX70 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A5A8TX70 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A5A8TX70 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A5A8TX70 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC17.7■□□□□ 0.42
COL6A5A8TX70 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC17.7■□□□□ 0.42
COL6A5A8TX70 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A5A8TX70 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC17.7■□□□□ 0.42
COL6A5A8TX70 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A5A8TX70 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC17.69■□□□□ 0.42
COL6A5A8TX70 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A5A8TX70 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC17.69■□□□□ 0.42
COL6A5A8TX70 MMAB-206ENST00000540016 945 ntTSL 3 BASIC17.69■□□□□ 0.42
COL6A5A8TX70 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
COL6A5A8TX70 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
COL6A5A8TX70 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC17.69■□□□□ 0.42
COL6A5A8TX70 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
COL6A5A8TX70 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A5A8TX70 RHEB-204ENST00000472642 900 ntTSL 3 BASIC17.69■□□□□ 0.42
COL6A5A8TX70 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC17.69■□□□□ 0.42
COL6A5A8TX70 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A5A8TX70 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A5A8TX70 AL121832.2-201ENST00000610979 668 ntBASIC17.68■□□□□ 0.42
COL6A5A8TX70 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A5A8TX70 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A5A8TX70 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC17.68■□□□□ 0.42
COL6A5A8TX70 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC17.68■□□□□ 0.42
COL6A5A8TX70 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
COL6A5A8TX70 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC17.68■□□□□ 0.42
COL6A5A8TX70 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
COL6A5A8TX70 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A5A8TX70 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A5A8TX70 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A5A8TX70 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A5A8TX70 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A5A8TX70 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC17.68■□□□□ 0.42
COL6A5A8TX70 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC17.68■□□□□ 0.42
COL6A5A8TX70 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A5A8TX70 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC17.68■□□□□ 0.42
COL6A5A8TX70 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
COL6A5A8TX70 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A5A8TX70 BAALC-201ENST00000297574 801 ntTSL 3 BASIC17.67■□□□□ 0.42
COL6A5A8TX70 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms