Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 DNM3-201ENST00000355305 3280 ntTSL 5 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 PEX11B-203ENST00000537888 1632 ntTSL 2 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 HPD-204ENST00000543163 1709 ntTSL 5 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC13.29□□□□□ -0.28
VPS13AQ96RL7 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 POLDIP3-209ENST00000617178 2006 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 METTL5-203ENST00000392640 800 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 SMIM26-202ENST00000435844 575 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 STMN4-203ENST00000519614 1273 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 CCDC42-202ENST00000539522 1087 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 Z92544.2-202ENST00000566927 407 ntTSL 3 BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 AC005336.1-201ENST00000585431 1243 ntBASIC13.28□□□□□ -0.28
VPS13AQ96RL7 FAM231B-201ENST00000600179 510 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 U62317.4-201ENST00000609758 448 ntBASIC13.28□□□□□ -0.28
VPS13AQ96RL7 MIF4GD-214ENST00000618645 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 RPS9-213ENST00000626547 476 ntTSL 2 BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 AL590094.1-206ENST00000635959 478 ntTSL 5 BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 AL590094.1-209ENST00000637260 499 ntTSL 5 BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 CACNA1G-AS1-202ENST00000505793 1433 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 AC245140.2-201ENST00000624054 1939 ntBASIC13.28□□□□□ -0.28
VPS13AQ96RL7 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 AP000787.1-205ENST00000536683 1485 ntTSL 5 BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 AC145285.1-201ENST00000469929 694 ntBASIC13.28□□□□□ -0.28
VPS13AQ96RL7 AC027277.1-201ENST00000535363 533 ntTSL 3 BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 SNHG21-205ENST00000561107 790 ntTSL 2 BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 LINC01996-201ENST00000573270 1273 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 SEPT4-AS1-203ENST00000580769 1000 ntTSL 3 BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 UBE2A-206ENST00000625938 1381 ntTSL 2 BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 AC007389.3-201ENST00000420724 1656 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 SNU13-201ENST00000215956 1630 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 CAPG-204ENST00000409724 1151 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 MRPL45P2-201ENST00000425159 927 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 AL049542.1-201ENST00000430231 278 ntBASIC13.28□□□□□ -0.28
VPS13AQ96RL7 AC010997.1-201ENST00000447646 350 ntBASIC13.28□□□□□ -0.28
VPS13AQ96RL7 RAB42P1-201ENST00000555078 316 ntBASIC13.28□□□□□ -0.28
VPS13AQ96RL7 AL033381.2-201ENST00000603854 732 ntBASIC13.28□□□□□ -0.28
VPS13AQ96RL7 AC068134.4-201ENST00000613365 122 ntBASIC13.28□□□□□ -0.28
VPS13AQ96RL7 CDCA7L-201ENST00000356195 2915 ntTSL 2 BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
VPS13AQ96RL7 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC13.27□□□□□ -0.28
VPS13AQ96RL7 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC13.27□□□□□ -0.28
VPS13AQ96RL7 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
VPS13AQ96RL7 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
VPS13AQ96RL7 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
VPS13AQ96RL7 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
VPS13AQ96RL7 MBL3P-201ENST00000402234 644 ntBASIC13.27□□□□□ -0.28
VPS13AQ96RL7 AC092100.1-201ENST00000435148 702 ntTSL 3 BASIC13.27□□□□□ -0.28
VPS13AQ96RL7 AC005009.2-201ENST00000452471 687 ntTSL 3 BASIC13.27□□□□□ -0.28
VPS13AQ96RL7 AC025822.1-201ENST00000455525 633 ntTSL 2 BASIC13.27□□□□□ -0.28
VPS13AQ96RL7 NKAPP1-203ENST00000554109 573 ntTSL 4 BASIC13.27□□□□□ -0.28
VPS13AQ96RL7 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
VPS13AQ96RL7 PCTP-202ENST00000325214 1856 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
VPS13AQ96RL7 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
VPS13AQ96RL7 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
VPS13AQ96RL7 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
VPS13AQ96RL7 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC13.27□□□□□ -0.29
VPS13AQ96RL7 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC13.27□□□□□ -0.29
VPS13AQ96RL7 ZNF793-205ENST00000587143 1488 ntAPPRIS P1 TSL 4 BASIC13.27□□□□□ -0.29
VPS13AQ96RL7 PEX1-204ENST00000438045 3329 ntTSL 2 BASIC13.27□□□□□ -0.29
VPS13AQ96RL7 SUCLG2-204ENST00000493112 1516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
VPS13AQ96RL7 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
VPS13AQ96RL7 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
VPS13AQ96RL7 CKS2-201ENST00000314355 613 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
VPS13AQ96RL7 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC13.27□□□□□ -0.29
VPS13AQ96RL7 DSCR9-203ENST00000581640 472 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
VPS13AQ96RL7 snoZ6.3-201ENST00000583496 76 ntBASIC13.27□□□□□ -0.29
VPS13AQ96RL7 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC13.27□□□□□ -0.29
VPS13AQ96RL7 LIPC-204ENST00000433326 1484 ntTSL 2 BASIC13.27□□□□□ -0.29
VPS13AQ96RL7 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
VPS13AQ96RL7 EDDM3B-201ENST00000326783 896 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 GSTK1-201ENST00000358406 1044 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 RSPH1-202ENST00000398352 937 ntTSL 5 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 AC007690.1-201ENST00000451924 468 ntBASIC13.26□□□□□ -0.29
VPS13AQ96RL7 TCP10L-202ENST00000472557 732 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 VAMP2-203ENST00000481878 557 ntAPPRIS ALT1 TSL 2 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 AC018868.2-201ENST00000559655 1259 ntBASIC13.26□□□□□ -0.29
VPS13AQ96RL7 AP005203.1-202ENST00000584204 561 ntTSL 4 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 AL109954.3-201ENST00000615088 558 ntBASIC13.26□□□□□ -0.29
VPS13AQ96RL7 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 AC040160.2-201ENST00000623816 1675 ntBASIC13.26□□□□□ -0.29
VPS13AQ96RL7 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 NEK11-213ENST00000511262 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC13.26□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 90.5 ms