Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AGGF1P1-201ENST00000509500 2073 ntBASIC13.5□□□□□ -0.25
COL28A1Q2UY09 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 STK40-201ENST00000359297 4837 ntTSL 2 BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 AC015688.4-201ENST00000580780 1647 ntBASIC13.5□□□□□ -0.25
COL28A1Q2UY09 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 AC006372.4-201ENST00000624122 1543 ntBASIC13.49□□□□□ -0.25
COL28A1Q2UY09 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 PRMT2-216ENST00000621201 1301 ntTSL 5 BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 MRPS28-201ENST00000276585 850 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 KRT8P30-201ENST00000432100 650 ntBASIC13.49□□□□□ -0.25
COL28A1Q2UY09 BPIFB5P-201ENST00000457066 1099 ntBASIC13.49□□□□□ -0.25
COL28A1Q2UY09 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 AP004550.1-201ENST00000532652 514 ntTSL 3 BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 AC084262.1-201ENST00000567818 751 ntBASIC13.49□□□□□ -0.25
COL28A1Q2UY09 HNRNPA1P16-201ENST00000575692 955 ntBASIC13.49□□□□□ -0.25
COL28A1Q2UY09 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 AC011489.1-201ENST00000586744 690 ntTSL 3 BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 LINC00244-201ENST00000625073 613 ntBASIC13.49□□□□□ -0.25
COL28A1Q2UY09 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 AP001267.2-201ENST00000532619 2086 ntBASIC13.49□□□□□ -0.25
COL28A1Q2UY09 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 SERPINA1-209ENST00000449399 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 AC097359.2-201ENST00000604992 2389 ntBASIC13.49□□□□□ -0.25
COL28A1Q2UY09 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
COL28A1Q2UY09 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 RDX-218ENST00000544551 4117 ntTSL 2 BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 AHCYP4-201ENST00000419201 1315 ntBASIC13.48□□□□□ -0.25
COL28A1Q2UY09 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms