Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
SHROOM1Q2M3G4 MUC1-225ENST00000612778 1836 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
SHROOM1Q2M3G4 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SHROOM1Q2M3G4 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 DANT2-201ENST00000430756 2079 ntTSL 3 BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 AC005077.3-201ENST00000449614 213 ntBASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 VDAC1P11-201ENST00000458323 852 ntBASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 AC068831.5-201ENST00000557387 328 ntBASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 FAHD2B-201ENST00000272610 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 SLC7A8-214ENST00000621729 1371 ntTSL 5 BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 UBE2A-206ENST00000625938 1381 ntTSL 2 BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 EGLN3-205ENST00000547327 2849 ntBASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 SERPINA13P-201ENST00000469935 1718 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 ZNF384-204ENST00000396801 3008 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHROOM1Q2M3G4 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 SNU13-204ENST00000402458 462 ntTSL 3 BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 KCCAT198-201ENST00000549251 549 ntTSL 4 BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 AC132812.1-201ENST00000583145 892 ntBASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 APOC1-209ENST00000592885 562 ntTSL 3 BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHROOM1Q2M3G4 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
SHROOM1Q2M3G4 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC16.06■□□□□ 0.16
SHROOM1Q2M3G4 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHROOM1Q2M3G4 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHROOM1Q2M3G4 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SHROOM1Q2M3G4 MKRN2-203ENST00000448482 1679 ntTSL 5 BASIC16.06■□□□□ 0.16
SHROOM1Q2M3G4 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHROOM1Q2M3G4 DDX46-212ENST00000628477 1584 ntTSL 5 BASIC16.06■□□□□ 0.16
SHROOM1Q2M3G4 KRT37-201ENST00000225550 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHROOM1Q2M3G4 KRT8P42-201ENST00000405771 1399 ntBASIC16.06■□□□□ 0.16
SHROOM1Q2M3G4 TAGLN3-205ENST00000478951 1301 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHROOM1Q2M3G4 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHROOM1Q2M3G4 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHROOM1Q2M3G4 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC16.06■□□□□ 0.16
SHROOM1Q2M3G4 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC16.06■□□□□ 0.16
SHROOM1Q2M3G4 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SHROOM1Q2M3G4 AL589935.1-203ENST00000412751 465 ntTSL 3 BASIC16.06■□□□□ 0.16
SHROOM1Q2M3G4 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC16.06■□□□□ 0.16
SHROOM1Q2M3G4 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC16.06■□□□□ 0.16
SHROOM1Q2M3G4 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC16.06■□□□□ 0.16
SHROOM1Q2M3G4 AC104212.2-201ENST00000478813 628 ntBASIC16.06■□□□□ 0.16
SHROOM1Q2M3G4 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms