Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 RAPGEF1-201ENST00000372189 6085 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CTDP1Q9Y5B0 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CTDP1Q9Y5B0 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CTDP1Q9Y5B0 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
CTDP1Q9Y5B0 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC16.16■□□□□ 0.18
CTDP1Q9Y5B0 RNF216-205ENST00000425013 5639 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CTDP1Q9Y5B0 ALPK3-201ENST00000258888 10917 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CTDP1Q9Y5B0 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CTDP1Q9Y5B0 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CTDP1Q9Y5B0 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CTDP1Q9Y5B0 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CTDP1Q9Y5B0 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CTDP1Q9Y5B0 AC020910.6-201ENST00000623084 1459 ntBASIC16.16■□□□□ 0.18
CTDP1Q9Y5B0 AC025183.3-201ENST00000623526 1482 ntBASIC16.16■□□□□ 0.18
CTDP1Q9Y5B0 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC16.16■□□□□ 0.18
CTDP1Q9Y5B0 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CTDP1Q9Y5B0 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 SYNGAP1-208ENST00000629380 9862 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 MAGI1-217ENST00000611645 6398 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 SSR4-202ENST00000370085 526 ntTSL 2 BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 GCSHP3-201ENST00000431120 391 ntBASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 PPIA-208ENST00000489459 907 ntTSL 2 BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 IGHV1-12-201ENST00000518307 205 ntBASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 AL132994.1-201ENST00000554098 400 ntBASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 C2orf69P1-201ENST00000563532 1093 ntBASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 AC012073.1-201ENST00000606114 1108 ntBASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 PPIA-210ENST00000620047 827 ntTSL 5 BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 HELLS-212ENST00000630929 400 ntTSL 5 BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 DFFA-202ENST00000377038 6032 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 COCH-203ENST00000460581 2688 ntTSL 2 BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 SON-203ENST00000381679 7860 ntTSL 5 BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 NCOR2-204ENST00000405201 8533 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 BMF-201ENST00000354670 4687 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CTDP1Q9Y5B0 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
CTDP1Q9Y5B0 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 AC006001.3-201ENST00000449307 7092 ntTSL 3 BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 CACNA1G-207ENST00000429973 7120 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 CACNA1G-217ENST00000507336 7116 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms